U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zmynd12 zinc finger, MYND-type containing 12 [ Danio rerio (zebrafish) ]

Gene ID: 492338, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
zmynd12provided by ZNC
Official Full Name
zinc finger, MYND-type containing 12provided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-133
See related
Ensembl:ENSDARG00000017055 AllianceGenome:ZFIN:ZDB-GENE-041114-133
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zymnd12; zgc:92280; CH73-261F6.1
Summary
Predicted to enable metal ion binding activity. Orthologous to human ZMYND12 (zinc finger MYND-type containing 12). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zmynd12 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (26902844..26918579, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (26883705..26899369, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene PR domain containing 2, with ZNF domain a Neighboring gene ribosomal modification protein rimK-like family member A Neighboring gene solute carrier family 16 member 1b Neighboring gene transfer RNA proline (anticodon UGG)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Variable phenotypes and penetrance between and within different zebrafish ciliary transition zone mutants. Wang J, et al. Dis Model Mech, 2022 Dec 1. PMID 36533556, Free PMC Article
  2. Evolutionary and Expression Analysis of MOV10 and MOV10L1 Reveals Their Origin, Duplication and Divergence. Yang S, et al. Int J Mol Sci, 2022 Jul 7. PMID 35886872, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger MYND domain-containing protein 12

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007304.1 → NP_001007305.1  zinc finger MYND domain-containing protein 12

    See identical proteins and their annotated locations for NP_001007305.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085655
    UniProtKB/TrEMBL
    A0A8M1N389, Q5U390
    Related
    ENSDARP00000021244.9, ENSDART00000008742.10
    Conserved Domains (2) summary
    pfam01753
    Location:18 → 55
    zf-MYND; MYND finger
    pfam13424
    Location:168 → 240
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    26902844..26918579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478243.1 → XP_021333918.1  zinc finger MYND domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q3E9
    Conserved Domains (1) summary
    pfam01753
    Location:18 → 55
    zf-MYND; MYND finger

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394726.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    516469..531286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools