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CLIP2 CAP-Gly domain containing linker protein 2 [ Canis lupus familiaris (dog) ]

Gene ID: 489797, updated on 17-Aug-2024

Summary

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Official Symbol
CLIP2provided by VGNC
Official Full Name
CAP-Gly domain containing linker protein 2provided by VGNC
Primary source
VGNC:VGNC:54013
See related
Ensembl:ENSCAFG00845002441
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CLIP2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (5844725..5916778, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (7729234..7801077, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (5946962..6019151, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (5836600..5908332, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (5783859..5855726, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111096191 Neighboring gene GTF2I repeat domain containing 1 Neighboring gene uncharacterized LOC119881501 Neighboring gene microRNA mir-2387 Neighboring gene replication factor C subunit 2 Neighboring gene linker for activation of T cells family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CAP-Gly domain-containing linker protein 2; LOW QUALITY PROTEIN: CAP-Gly domain-containing linker protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    5844725..5916778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667873.1 → XP_038523801.1  CAP-Gly domain-containing linker protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KFF9, A0A8I3MN32
    Related
    ENSCAFP00845003481.1, ENSCAFT00845004359.1
    Conserved Domains (2) summary
    COG1196
    Location:353 → 984
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

  2. XM_038667872.1 → XP_038523800.1  CAP-Gly domain-containing linker protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S4H6
    Related
    ENSCAFP00845003445.1, ENSCAFT00845004315.1
    Conserved Domains (2) summary
    COG1196
    Location:360 → 1019
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    5836600..5908332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038477828.1 → XP_038333756.1  LOW QUALITY PROTEIN: CAP-Gly domain-containing linker protein 2 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    5783859..5855726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603167.1 → XP_038459095.1  CAP-Gly domain-containing linker protein 2 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:360 → 984
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

  2. XM_038603166.1 → XP_038459094.1  CAP-Gly domain-containing linker protein 2 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:359 → 1019
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    5946962..6019151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539074.1 → XP_038395002.1  CAP-Gly domain-containing linker protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S4H6
    Conserved Domains (2) summary
    COG1196
    Location:360 → 1019
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

  2. XM_038539075.1 → XP_038395003.1  CAP-Gly domain-containing linker protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KFF9, A0A8I3MN32
    Conserved Domains (2) summary
    COG1196
    Location:353 → 984
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    7729234..7801077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038536620.1 → XP_038392548.1  CAP-Gly domain-containing linker protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8P0SGN5
    Conserved Domains (2) summary
    COG1196
    Location:360 → 984
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain

  2. XM_038536611.1 → XP_038392539.1  CAP-Gly domain-containing linker protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8P0SGN5
    Conserved Domains (2) summary
    COG1196
    Location:359 → 1019
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:224 → 288
    CAP_GLY; CAP-Gly domain
Nucleotide Protein
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