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H1-6 H1.6 linker histone, cluster member [ Canis lupus familiaris (dog) ]

Gene ID: 488266, updated on 5-Mar-2024

Summary

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Official Symbol
H1-6provided by VGNC
Official Full Name
H1.6 linker histone, cluster memberprovided by VGNC
Primary source
VGNC:VGNC:83719
See related
Ensembl:ENSCAFG00845025774
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
HIST1H1T
Orthologs
human mouse all
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Genomic context

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See H1-6 in Genome Data Viewer
Location:
chromosome: 35
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (24159384..24181022, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (23922755..23944390, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (25459273..25480911, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (23975584..23997213, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (24026653..24031602, complement)

Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene homeostatic iron regulator Neighboring gene uncharacterized LOC111093991 Neighboring gene H2B clustered histone 4 Neighboring gene H2A clustered histone 6 Neighboring gene H1.4 linker histone, cluster member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H1t
Names
histone cluster 1, H1t

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051839.1 Reference ROS_Cfam_1.0

    Range
    24159384..24181022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446542.1 → XP_038302470.1  histone H1t

    UniProtKB/TrEMBL
    A0A8I3PR73
    Related
    ENSCAFP00845035675.1, ENSCAFT00845045477.1
    Conserved Domains (1) summary
    pfam00538
    Location:43 → 112
    Linker_histone; linker histone H1 and H5 family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049295.1 Alternate UMICH_Zoey_3.1

    Range
    23975584..23997213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520671.1 → XP_038376599.1  histone H1t

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

    Range
    24026653..24031602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648773.1 → XP_038504701.1  histone H1t

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

    Range
    25459273..25480911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584342.1 → XP_038440270.1  histone H1t

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23922755..23944390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005640095.4 → XP_005640152.1  histone H1t

    UniProtKB/TrEMBL
    E2R494
    Conserved Domains (1) summary
    pfam00538
    Location:43 → 112
    Linker_histone; linker histone H1 and H5 family
Nucleotide Protein
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