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CHODL chondrolectin [ Canis lupus familiaris (dog) ]

Gene ID: 487699, updated on 5-Mar-2024

Summary

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Official Symbol
CHODLprovided by VGNC
Official Full Name
chondrolectinprovided by VGNC
Primary source
VGNC:VGNC:39225
See related
Ensembl:ENSCAFG00845025297
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CHODL in Genome Data Viewer
Location:
chromosome: 31
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 31 NC_051835.1 (14611439..14632757)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 31 NC_006613.4 (14602689..14624008)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 31 NC_049252.1 (15024650..15045967)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 31 NC_049291.1 (14614329..14635629)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 31 NC_049772.1 (14613762..14635078)

Chromosome 31 - NC_051835.1Genomic Context describing neighboring genes Neighboring gene chromosome 31 C21orf91 homolog Neighboring gene uncharacterized LOC111093522 Neighboring gene aspartate aminotransferase, mitochondrial-like Neighboring gene transmembrane serine protease 15 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondrolectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051835.1 Reference ROS_Cfam_1.0

    Range
    14611439..14632757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443262.1 → XP_038299190.1  chondrolectin isoform X1

    UniProtKB/TrEMBL
    A0A8C0R8E7, A0A8C0TWL5, A0A8I3PL02
    Related
    ENSCAFP00845035105.1, ENSCAFT00845044795.1
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038443263.1 → XP_038299191.1  chondrolectin isoform X2

    UniProtKB/TrEMBL
    A0A8C0TYJ3, A0A8C0Z7E0, A0A8I3PKT2
    Related
    ENSCAFP00845035021.1, ENSCAFT00845044696.1
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038443264.1 → XP_038299192.1  chondrolectin isoform X3

    UniProtKB/TrEMBL
    A0A8C0R8E7, A0A8I3Q6V8, A0A8P0P7M7
    Related
    ENSCAFP00845035184.1, ENSCAFT00845044894.1
    Conserved Domains (1) summary
    cl02432
    Location:1 → 139
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049291.1 Alternate UMICH_Zoey_3.1

    Range
    14614329..14635629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517677.1 → XP_038373605.1  chondrolectin isoform X1

    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038517678.1 → XP_038373606.1  chondrolectin isoform X2

    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038517680.1 → XP_038373608.1  chondrolectin isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:1 → 139
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049772.1 Alternate UNSW_CanFamBas_1.0

    Range
    14613762..14635078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645636.1 → XP_038501564.1  chondrolectin isoform X1

    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038645637.1 → XP_038501565.1  chondrolectin isoform X2

    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038645638.1 → XP_038501566.1  chondrolectin isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:1 → 139
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049252.1 Alternate UU_Cfam_GSD_1.0

    Range
    15024650..15045967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038581264.1 → XP_038437192.1  chondrolectin isoform X1

    UniProtKB/TrEMBL
    A0A8C0R8E7, A0A8C0TWL5, A0A8I3PL02
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038581265.1 → XP_038437193.1  chondrolectin isoform X2

    UniProtKB/TrEMBL
    A0A8C0TYJ3, A0A8C0Z7E0, A0A8I3PKT2
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038581266.1 → XP_038437194.1  chondrolectin isoform X3

    UniProtKB/TrEMBL
    A0A8C0R8E7, A0A8I3Q6V8, A0A8P0P7M7
    Conserved Domains (1) summary
    cl02432
    Location:1 → 139
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006613.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    14602689..14624008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_544823.7 → XP_544823.2  chondrolectin isoform X1

    UniProtKB/TrEMBL
    A0A8C0R8E7, A0A8C0TWL5, A0A8I3PL02
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_005638776.4 → XP_005638833.1  chondrolectin isoform X2

    UniProtKB/TrEMBL
    A0A8C0TYJ3, A0A8C0Z7E0, A0A8I3PKT2
    Conserved Domains (1) summary
    cl02432
    Location:28 → 180
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_014109868.3 → XP_013965343.1  chondrolectin isoform X3

    UniProtKB/TrEMBL
    A0A8C0R8E7, A0A8I3Q6V8, A0A8P0P7M7
    Conserved Domains (1) summary
    cl02432
    Location:1 → 139
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
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