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SPATA21 spermatogenesis associated 21 [ Canis lupus familiaris (dog) ]

Gene ID: 487418, updated on 5-Mar-2024

Summary

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Official Symbol
SPATA21provided by VGNC
Official Full Name
spermatogenesis associated 21provided by VGNC
Primary source
VGNC:VGNC:46709
See related
Ensembl:ENSCAFG00845004731
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SPATA21 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (81940701..81970640)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (77830907..77860793)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (80778706..80808592)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (78693696..78723598)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (79710580..79740464)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene ciliary rootlet coiled-coil, rootletin Neighboring gene NECAP endocytosis associated 2 Neighboring gene SUZ RNA binding domain containing 1 Neighboring gene uncharacterized LOC111093873 Neighboring gene F-box protein 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    81940701..81970640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038660200.1 → XP_038516128.1  spermatogenesis-associated protein 21 isoform X5

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    PHA03247
    Location:12 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_038660196.1 → XP_038516124.1  spermatogenesis-associated protein 21 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_038660197.1 → XP_038516125.1  spermatogenesis-associated protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Related
    ENSCAFP00845006671.1, ENSCAFT00845008466.1
    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_038660198.1 → XP_038516126.1  spermatogenesis-associated protein 21 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    PHA03247
    Location:54 → 422
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  5. XM_038660199.1 → XP_038516127.1  spermatogenesis-associated protein 21 isoform X4

    UniProtKB/TrEMBL
    A0A8P0NHB3
    Conserved Domains (2) summary
    PHA03247
    Location:10 → 379
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:429 → 488
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RNA

  1. XR_005423711.1 RNA Sequence

  2. XR_005423712.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    78693696..78723598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038470980.1 → XP_038326908.1  spermatogenesis-associated protein 21 isoform X5

    Conserved Domains (2) summary
    PHA03247
    Location:12 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_038470976.1 → XP_038326904.1  spermatogenesis-associated protein 21 isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_038470977.1 → XP_038326905.1  spermatogenesis-associated protein 21 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_038470978.1 → XP_038326906.1  spermatogenesis-associated protein 21 isoform X3

    Conserved Domains (2) summary
    PHA03247
    Location:54 → 422
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  5. XM_038470979.1 → XP_038326907.1  spermatogenesis-associated protein 21 isoform X4

    Conserved Domains (2) summary
    PHA03247
    Location:10 → 379
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:429 → 488
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RNA

  1. XR_005322538.1 RNA Sequence

  2. XR_005322539.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    79710580..79740464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038596113.1 → XP_038452041.1  spermatogenesis-associated protein 21 isoform X5

    Conserved Domains (2) summary
    PHA03247
    Location:12 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_038596108.1 → XP_038452036.1  spermatogenesis-associated protein 21 isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_038596109.1 → XP_038452037.1  spermatogenesis-associated protein 21 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_038596110.1 → XP_038452038.1  spermatogenesis-associated protein 21 isoform X3

    Conserved Domains (2) summary
    PHA03247
    Location:54 → 422
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  5. XM_038596111.1 → XP_038452039.1  spermatogenesis-associated protein 21 isoform X4

    Conserved Domains (2) summary
    PHA03247
    Location:10 → 379
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:429 → 488
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RNA

  1. XR_005390706.1 RNA Sequence

  2. XR_005390707.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    80778706..80808592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038531857.1 → XP_038387785.1  spermatogenesis-associated protein 21 isoform X5

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0

  2. XM_038531853.1 → XP_038387781.1  spermatogenesis-associated protein 21 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0

  3. XM_038531854.1 → XP_038387782.1  spermatogenesis-associated protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_038531855.1 → XP_038387783.1  spermatogenesis-associated protein 21 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0

  5. XM_038531856.1 → XP_038387784.1  spermatogenesis-associated protein 21 isoform X4

    UniProtKB/TrEMBL
    A0A8P0NHB3

RNA

  1. XR_005356135.1 RNA Sequence

  2. XR_005356136.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    77830907..77860793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022414221.2 → XP_022269929.1  spermatogenesis-associated protein 21 isoform X5

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl26464
    Location:12 → 419
    Atrophin-1; Atrophin-1 family

  2. XM_005617956.4 → XP_005618013.1  spermatogenesis-associated protein 21 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (1) summary
    cd00051
    Location:473 → 532
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_005617957.4 → XP_005618014.1  spermatogenesis-associated protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    PHA03247
    Location:54 → 423
    PHA03247; large tegument protein UL36; Provisional
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_022414215.2 → XP_022269923.1  spermatogenesis-associated protein 21 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RWN3, A0A8I3MVI0
    Conserved Domains (2) summary
    cd00051
    Location:472 → 531
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl26464
    Location:54 → 418
    Atrophin-1; Atrophin-1 family

  5. XM_022414219.2 → XP_022269927.1  spermatogenesis-associated protein 21 isoform X4

    UniProtKB/TrEMBL
    A0A8P0NHB3
    Conserved Domains (2) summary
    cd00051
    Location:429 → 488
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl26464
    Location:10 → 375
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_002622607.2 RNA Sequence

  2. XR_002622609.2 RNA Sequence

Nucleotide Protein
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