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CCDC102B coiled-coil domain containing 102B [ Canis lupus familiaris (dog) ]

Gene ID: 483942, updated on 5-Mar-2024

Summary

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Official Symbol
CCDC102Bprovided by VGNC
Official Full Name
coiled-coil domain containing 102Bprovided by VGNC
Primary source
VGNC:VGNC:38776
See related
Ensembl:ENSCAFG00845001729
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human all
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Genomic context

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See CCDC102B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (9044891..9183580, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (10224320..10362934, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (9231056..9369638, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (9059331..9197618, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (9020475..9159095, complement)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119870701 Neighboring gene docking protein 6 Neighboring gene uncharacterized LOC119870702 Neighboring gene heterogeneous nuclear ribonucleoprotein C-like Neighboring gene uncharacterized LOC106557620 Neighboring gene thioredoxin related transmembrane protein 3 Neighboring gene uncharacterized LOC111090592

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 102B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    9044891..9183580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038653958.1 → XP_038509886.1  coiled-coil domain-containing protein 102B isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTF7, A0A8I3MQK2, A0A8P0SZT1
    Related
    ENSCAFP00845002426.1, ENSCAFT00845003039.1
    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_038653961.1 → XP_038509889.1  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8I3ML99, A0A8P0S5Z6
    Related
    ENSCAFP00845002443.1, ENSCAFT00845003061.1
    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_038653957.1 → XP_038509885.1  coiled-coil domain-containing protein 102B isoform X1

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_038653959.1 → XP_038509887.1  coiled-coil domain-containing protein 102B isoform X3

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:125 → 404
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_038653963.1 → XP_038509891.1  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8I3ML99, A0A8P0S5Z6
    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_038653962.1 → XP_038509890.1  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8I3ML99, A0A8P0S5Z6
    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_038653960.1 → XP_038509888.1  coiled-coil domain-containing protein 102B isoform X4

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:123 → 402
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    9059331..9197618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038465222.1 → XP_038321150.1  coiled-coil domain-containing protein 102B isoform X2

    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_038465225.1 → XP_038321153.1  coiled-coil domain-containing protein 102B isoform X5

  3. XM_038465221.1 → XP_038321149.1  coiled-coil domain-containing protein 102B isoform X1

    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_038465223.1 → XP_038321151.1  coiled-coil domain-containing protein 102B isoform X3

  5. XM_038465227.1 → XP_038321155.1  coiled-coil domain-containing protein 102B isoform X5

  6. XM_038465226.1 → XP_038321154.1  coiled-coil domain-containing protein 102B isoform X5

  7. XM_038465224.1 → XP_038321152.1  coiled-coil domain-containing protein 102B isoform X4

    Conserved Domains (1) summary
    TIGR02168
    Location:123 → 402
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    9020475..9159095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038590129.1 → XP_038446057.1  coiled-coil domain-containing protein 102B isoform X2

    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_038590133.1 → XP_038446061.1  coiled-coil domain-containing protein 102B isoform X5

    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_038590128.1 → XP_038446056.1  coiled-coil domain-containing protein 102B isoform X1

    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_038590130.1 → XP_038446058.1  coiled-coil domain-containing protein 102B isoform X3

    Conserved Domains (1) summary
    TIGR02168
    Location:125 → 404
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_038590135.1 → XP_038446063.1  coiled-coil domain-containing protein 102B isoform X5

    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_038590134.1 → XP_038446062.1  coiled-coil domain-containing protein 102B isoform X5

    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_038590132.1 → XP_038446060.1  coiled-coil domain-containing protein 102B isoform X4

    Conserved Domains (1) summary
    TIGR02168
    Location:123 → 402
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    9231056..9369638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038525821.1 → XP_038381749.1  coiled-coil domain-containing protein 102B isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTF7, A0A8C0LW01
    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_038525824.1 → XP_038381752.1  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5

  3. XM_038525820.1 → XP_038381748.1  coiled-coil domain-containing protein 102B isoform X1

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8C0RV52
    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_038525822.1 → XP_038381750.1  coiled-coil domain-containing protein 102B isoform X3

    UniProtKB/TrEMBL
    A0A8C0LQS5

  5. XM_038525826.1 → XP_038381754.1  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5

  6. XM_038525825.1 → XP_038381753.1  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5

  7. XM_038525823.1 → XP_038381751.1  coiled-coil domain-containing protein 102B isoform X4

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:123 → 402
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10224320..10362934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014106347.3 → XP_013961822.2  coiled-coil domain-containing protein 102B isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTF7, A0A8I3MQK2, A0A8P0SZT1
    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_014106432.3 → XP_013961907.2  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8I3ML99, A0A8P0S5Z6
    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_038471578.1 → XP_038327506.1  coiled-coil domain-containing protein 102B isoform X1

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:142 → 421
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_022413287.2 → XP_022268995.2  coiled-coil domain-containing protein 102B isoform X3

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:125 → 404
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_022413350.2 → XP_022269058.2  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8I3ML99, A0A8P0S5Z6
    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_022413331.2 → XP_022269039.2  coiled-coil domain-containing protein 102B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LQS5, A0A8I3ML99, A0A8P0S5Z6
    Conserved Domains (1) summary
    TIGR02168
    Location:114 → 393
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_038471771.1 → XP_038327699.1  coiled-coil domain-containing protein 102B isoform X4

    UniProtKB/TrEMBL
    A0A8C0LQS5
    Conserved Domains (1) summary
    TIGR02168
    Location:123 → 402
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
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