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CCDC102B coiled-coil domain containing 102B [ Homo sapiens (human) ]

Gene ID: 79839, updated on 23-Nov-2021

Summary

Official Symbol
CCDC102Bprovided by HGNC
Official Full Name
coiled-coil domain containing 102Bprovided by HGNC
Primary source
HGNC:HGNC:26295
See related
Ensembl:ENSG00000150636
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AN; ACY1L; HsT1731; C18orf14
Expression
Broad expression in placenta (RPKM 1.5), lung (RPKM 1.1) and 20 other tissues See more
Orthologs
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Genomic context

See CCDC102B in Genome Data Viewer
Location:
18q22.1-q22.2
Exon count:
19
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (68715216..69214350)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (66382453..66722426)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene metallothionein-like 3, pseudogene Neighboring gene thioredoxin related transmembrane protein 3 Neighboring gene RNA, U6 small nuclear 39, pseudogene Neighboring gene succinate dehydrogenase complex subunit C pseudogene 1 Neighboring gene aminoacylase 1 pseudogene Neighboring gene uncharacterized LOC107985134 Neighboring gene uncharacterized LOC107985135 Neighboring gene uncharacterized LOC107985136

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23594, MGC161726, MGC161728, DKFZp434K1426, DKFZp686I08254

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
coiled-coil domain-containing protein 102B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093729.2NP_001087198.2  coiled-coil domain-containing protein 102B

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC011087, AC022035, AC040896, AC096708
    Consensus CDS
    CCDS11996.2
    Conserved Domains (1) summary
    COG1196
    Location:220511
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  2. NM_024781.3NP_079057.3  coiled-coil domain-containing protein 102B

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC011087, AC022035, AC096708
    Consensus CDS
    CCDS11996.2
    Related
    ENSP00000353377.5, ENST00000360242.9
    Conserved Domains (1) summary
    COG1196
    Location:220511
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    68715216..69214350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017025976.1XP_016881465.1  coiled-coil domain-containing protein 102B isoform X4

    Conserved Domains (1) summary
    pfam14662
    Location:345511
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
  2. XM_017025973.1XP_016881462.1  coiled-coil domain-containing protein 102B isoform X1

    Conserved Domains (1) summary
    pfam14662
    Location:345511
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
  3. XM_017025975.1XP_016881464.1  coiled-coil domain-containing protein 102B isoform X3

    UniProtKB/Swiss-Prot
    Q68D86
    Conserved Domains (1) summary
    COG1196
    Location:220511
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  4. XM_017025980.1XP_016881469.1  coiled-coil domain-containing protein 102B isoform X7

  5. XM_017025979.1XP_016881468.1  coiled-coil domain-containing protein 102B isoform X6

  6. XM_017025978.1XP_016881467.1  coiled-coil domain-containing protein 102B isoform X6

  7. XM_017025974.1XP_016881463.1  coiled-coil domain-containing protein 102B isoform X1

    Conserved Domains (1) summary
    pfam14662
    Location:345511
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
  8. XM_011526174.2XP_011524476.1  coiled-coil domain-containing protein 102B isoform X2

    See identical proteins and their annotated locations for XP_011524476.1

    Conserved Domains (1) summary
    pfam14662
    Location:345511
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
  9. XM_017025977.1XP_016881466.1  coiled-coil domain-containing protein 102B isoform X5

  10. XM_011526175.2XP_011524477.1  coiled-coil domain-containing protein 102B isoform X8

    Related
    ENSP00000463538.1, ENST00000584775.5
    Conserved Domains (1) summary
    COG1196
    Location:107353
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. XR_935251.2 RNA Sequence

    Related
    ENST00000577772.5
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