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mib1 mind bomb 1 [ Drosophila pseudoobscura ]

Gene ID: 4812194, updated on 23-May-2024

Summary

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Gene symbol
mib1
Gene description
mind bomb 1
See related
EnsemblRapid:LOC4812194
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See mib1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (60935502..60939837, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 Neighboring gene mitochondrial ribosomal protein S31 Neighboring gene uncharacterized LOC6900295 Neighboring gene hydroxyacylglutathione hydrolase, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase mind-bomb

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    60935502..60939837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001352981.3 → XP_001353017.1  E3 ubiquitin-protein ligase mind-bomb

    See identical proteins and their annotated locations for XP_001353017.1

    UniProtKB/TrEMBL
    A0A6I8UBW6, Q29D96
    Related
    XP_001353017.1, XM_001352981.3
    Conserved Domains (7) summary
    cd00204
    Location:605 → 733
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd02339
    Location:151 → 195
    ZZ_Mind_bomb; Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has ...
    pfam06701
    Location:222 → 286
    MIB_HERC2; Mib_herc2
    pfam12796
    Location:681 → 777
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:545 → 593
    Ank_4; Ankyrin repeats (many copies)
    pfam13920
    Location:953 → 996
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:712 → 744
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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