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PELO pelota mRNA surveillance and ribosome rescue factor [ Canis lupus familiaris (dog) ]

Gene ID: 479338, updated on 5-Mar-2024

Summary

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Gene symbol
PELO
Gene description
pelota mRNA surveillance and ribosome rescue factor
See related
Ensembl:ENSCAFG00845000521
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (62939633..62941473, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (62216402..62218376, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (63366543..63368230, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (62714001..62716979, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (62831158..62834996, complement)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene 60S ribosomal protein L36a-like Neighboring gene integrin subunit alpha 1 Neighboring gene uncharacterized LOC119871537 Neighboring gene uncharacterized LOC111095611

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nonfunctional rRNA decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, no-go decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, non-stop decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein pelota homolog
Names
pelota homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    62939633..62941473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038663736.1 → XP_038519664.1  protein pelota homolog

    UniProtKB/TrEMBL
    A0A8C0LFU4, A0A8C0M0C8, A0A8C0QMJ0, A0A8I3MB33
    Related
    ENSCAFP00845000725.1, ENSCAFT00845000960.1
    Conserved Domains (1) summary
    COG1537
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    62714001..62716979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474033.1 → XP_038329961.1  protein pelota homolog

    Conserved Domains (1) summary
    COG1537
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    62831158..62834996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038599426.1 → XP_038455354.1  protein pelota homolog

    Conserved Domains (1) summary
    COG1537
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    63366543..63368230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535132.1 → XP_038391060.1  protein pelota homolog

    UniProtKB/TrEMBL
    A0A8C0LFU4, A0A8C0M0C8, A0A8C0QMJ0, A0A8I3MB33
    Conserved Domains (1) summary
    COG1537
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    62216402..62218376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536477.7 → XP_536477.4  protein pelota homolog

    UniProtKB/TrEMBL
    A0A8C0LFU4, A0A8C0M0C8, A0A8C0QMJ0, A0A8I3MB33
    Conserved Domains (1) summary
    COG1537
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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