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PELO pelota mRNA surveillance and ribosome rescue factor [ Homo sapiens (human) ]

Gene ID: 53918, updated on 3-Nov-2024

Summary

Official Symbol
PELOprovided by HGNC
Official Full Name
pelota mRNA surveillance and ribosome rescue factorprovided by HGNC
Primary source
HGNC:HGNC:8829
See related
Ensembl:ENSG00000152684 MIM:605757; AllianceGenome:HGNC:8829
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CGI-17; PRO1770
Summary
This gene encodes a protein which contains a conserved nuclear localization signal. The encoded protein may have a role in spermatogenesis, cell cycle control, and in meiotic cell division. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in adrenal (RPKM 14.2), spleen (RPKM 12.3) and 25 other tissues See more
Orthologs
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Genomic context

See PELO in Genome Data Viewer
Location:
5q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (52787916..52804044)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (53615621..53631750)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (52083750..52099878)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378962 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:51760029-51760269 Neighboring gene major facilitator superfamily domain containing 4B pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:51940949-51941189 Neighboring gene PELO antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr5:52069838-52070355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22544 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:52095759-52096457 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:52096458-52097157 Neighboring gene integrin subunit alpha 1 Neighboring gene B3GNTL1 pseudogene 1 Neighboring gene ribosomal protein L17 pseudogene 21

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
EBI GWAS Catalog
Genome-wide association study of antiphospholipid antibodies.
EBI GWAS Catalog
Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Pol gag-pol HIV-1 Pol is identified to have a physical interaction with pelota homolog (PELO) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ribosome binding IDA
Inferred from Direct Assay
more info
PubMed 
enables stalled ribosome sensor activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in RNA surveillance IEA
Inferred from Electronic Annotation
more info
 
involved_in cell division IEA
Inferred from Electronic Annotation
more info
 
involved_in chromosome organization IEA
Inferred from Electronic Annotation
more info
 
involved_in endoderm development IEA
Inferred from Electronic Annotation
more info
 
involved_in inner cell mass cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in mesenchymal to epithelial transition IEA
Inferred from Electronic Annotation
more info
 
involved_in nonfunctional rRNA decay IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in nuclear-transcribed mRNA catabolic process, no-go decay IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in nuclear-transcribed mRNA catabolic process, no-go decay IDA
Inferred from Direct Assay
more info
PubMed 
involved_in nuclear-transcribed mRNA catabolic process, non-stop decay IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of translation IEA
Inferred from Electronic Annotation
more info
 
involved_in rescue of stalled ribosome IDA
Inferred from Direct Assay
more info
PubMed 
involved_in ribosome disassembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in ribosome disassembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of Dom34-Hbs1 complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cytosolic ribosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein pelota homolog
Names
hPelota
pelota homolog
protein Dom34 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015946.5NP_057030.3  protein pelota homolog

    See identical proteins and their annotated locations for NP_057030.3

    Status: REVIEWED

    Source sequence(s)
    AC026230
    Consensus CDS
    CCDS3956.1
    UniProtKB/Swiss-Prot
    Q9BRX2, Q9GZS6, Q9Y306
    UniProtKB/TrEMBL
    B3KPC1
    Related
    ENSP00000274311.2, ENST00000274311.3
    Conserved Domains (4) summary
    COG1537
    Location:1371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
    pfam03463
    Location:1128
    eRF1_1; eRF1 domain 1
    pfam03464
    Location:136268
    eRF1_2; eRF1 domain 2
    pfam03465
    Location:271370
    eRF1_3; eRF1 domain 3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    52787916..52804044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    53615621..53631750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)