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DDX47 DEAD-box helicase 47 [ Canis lupus familiaris (dog) ]

Gene ID: 477691, updated on 5-Mar-2024

Summary

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Official Symbol
DDX47provided by VGNC
Official Full Name
DEAD-box helicase 47provided by VGNC
Primary source
VGNC:VGNC:39860
See related
Ensembl:ENSCAFG00845023638
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See DDX47 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (33817022..33832537, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (12919447..12934998)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (12653652..12669241)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (33710542..33726098, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (33660892..33676458, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor class C group 5 member A Neighboring gene U6 snRNA-associated Sm-like protein LSm5 Neighboring gene apolipoprotein L domain containing 1 Neighboring gene uncharacterized LOC102156500

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX47
XP_038294888.1
XP_038369548.1
XP_038432778.1
XP_038497368.1
XP_534885.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    33817022..33832537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438960.1 → XP_038294888.1  probable ATP-dependent RNA helicase DDX47 isoform X1

    UniProtKB/TrEMBL
    A0A8C0K172
    Related
    ENSCAFP00845032737.1, ENSCAFT00845041741.1
    Conserved Domains (2) summary
    PRK11192
    Location:21 → 427
    PRK11192; ATP-dependent RNA helicase SrmB; Provisional
    cd17954
    Location:22 → 224
    DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    33710542..33726098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513620.1 → XP_038369548.1  probable ATP-dependent RNA helicase DDX47 isoform X2

    Conserved Domains (2) summary
    COG0513
    Location:19 → 442
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17954
    Location:39 → 241
    DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    33660892..33676458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038641440.1 → XP_038497368.1  probable ATP-dependent RNA helicase DDX47 isoform X3

    Conserved Domains (2) summary
    COG0513
    Location:19 → 442
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17954
    Location:39 → 241
    DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    12653652..12669241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038576850.1 → XP_038432778.1  probable ATP-dependent RNA helicase DDX47 isoform X4

    UniProtKB/TrEMBL
    A0A8C0NQ06, A0A8P0SHX2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    12919447..12934998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534885.7 → XP_534885.3  probable ATP-dependent RNA helicase DDX47 isoform X5

    UniProtKB/TrEMBL
    A0A8C0NQ06, A0A8P0SHX2
    Conserved Domains (2) summary
    COG0513
    Location:19 → 442
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17954
    Location:39 → 241
    DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47
Nucleotide Protein
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