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C1H18orf54 chromosome 1 C18orf54 homolog [ Canis lupus familiaris (dog) ]

Gene ID: 476192, updated on 5-Mar-2024

Summary

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Official Symbol
C1H18orf54provided by VGNC
Official Full Name
chromosome 1 C18orf54 homologprovided by VGNC
Primary source
VGNC:VGNC:52506
See related
Ensembl:ENSCAFG00845002731
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See C1H18orf54 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (20990171..21016205, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (22088208..22114246, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (21210308..21236342, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (21046278..21072518, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (20938706..20964747, complement)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095182 Neighboring gene cupin superfamily member 1 Neighboring gene thymosin beta-4 Neighboring gene StAR related lipid transfer domain containing 6 Neighboring gene DNA polymerase iota

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
lung adenoma susceptibility protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    20990171..21016205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038654086.1 → XP_038510014.1  lung adenoma susceptibility protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SAI6, A0A8I3MU92, A0A8P0NXW0
    Related
    ENSCAFP00845003916.1, ENSCAFT00845004902.1
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  2. XM_038654084.1 → XP_038510012.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  3. XM_038654081.1 → XP_038510009.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  4. XM_038654082.1 → XP_038510010.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  5. XM_038654083.1 → XP_038510011.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  6. XM_038654085.1 → XP_038510013.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  7. XM_038654087.1 → XP_038510015.1  lung adenoma susceptibility protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Related
    ENSCAFP00845003897.1, ENSCAFT00845004873.1
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  8. XM_038654088.1 → XP_038510016.1  lung adenoma susceptibility protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8I3MU92, A0A8P0NXW0
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

RNA

  1. XR_005421001.1 RNA Sequence

  2. XR_005421003.1 RNA Sequence

  3. XR_005421002.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    21046278..21072518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038465351.1 → XP_038321279.1  lung adenoma susceptibility protein 2 isoform X2

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  2. XM_038465349.1 → XP_038321277.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  3. XM_038465346.1 → XP_038321274.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  4. XM_038465347.1 → XP_038321275.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  5. XM_038465348.1 → XP_038321276.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  6. XM_038465350.1 → XP_038321278.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  7. XM_038465352.1 → XP_038321280.1  lung adenoma susceptibility protein 2 isoform X3

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  8. XM_038465353.1 → XP_038321281.1  lung adenoma susceptibility protein 2 isoform X4

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

RNA

  1. XR_005319805.1 RNA Sequence

  2. XR_005319807.1 RNA Sequence

  3. XR_005319806.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    20938706..20964747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038590265.1 → XP_038446193.1  lung adenoma susceptibility protein 2 isoform X2

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  2. XM_038590263.1 → XP_038446191.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  3. XM_038590260.1 → XP_038446188.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  4. XM_038590261.1 → XP_038446189.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  5. XM_038590262.1 → XP_038446190.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  6. XM_038590264.1 → XP_038446192.1  lung adenoma susceptibility protein 2 isoform X1

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  7. XM_038590266.1 → XP_038446194.1  lung adenoma susceptibility protein 2 isoform X3

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  8. XM_038590267.1 → XP_038446195.1  lung adenoma susceptibility protein 2 isoform X4

    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

RNA

  1. XR_005388048.1 RNA Sequence

  2. XR_005388050.1 RNA Sequence

  3. XR_005388049.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    21210308..21236342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038525954.1 → XP_038381882.1  lung adenoma susceptibility protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SAI6, A0A8I3MU92, A0A8P0NXW0
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  2. XM_038525952.1 → XP_038381880.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  3. XM_038525949.1 → XP_038381877.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  4. XM_038525950.1 → XP_038381878.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  5. XM_038525951.1 → XP_038381879.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  6. XM_038525953.1 → XP_038381881.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  7. XM_038525955.1 → XP_038381883.1  lung adenoma susceptibility protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  8. XM_038525956.1 → XP_038381884.1  lung adenoma susceptibility protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8I3MU92, A0A8P0NXW0
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

RNA

  1. XR_005353466.1 RNA Sequence

  2. XR_005353468.1 RNA Sequence

  3. XR_005353467.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22088208..22114246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005615386.4 → XP_005615443.1  lung adenoma susceptibility protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005615443.1

    UniProtKB/TrEMBL
    A0A8C0SAI6, A0A8I3MU92, A0A8P0NXW0
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  2. XM_038484589.1 → XP_038340517.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  3. XM_038484491.1 → XP_038340419.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  4. XM_038484492.1 → XP_038340420.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  5. XM_022416775.2 → XP_022272483.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  6. XM_022416782.2 → XP_022272490.1  lung adenoma susceptibility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  7. XM_022416791.2 → XP_022272499.1  lung adenoma susceptibility protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0YVB9, A0A8I3MU86
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

  8. XM_022416796.2 → XP_022272504.1  lung adenoma susceptibility protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8I3MU92, A0A8P0NXW0
    Conserved Domains (1) summary
    pfam15792
    Location:162 → 236
    LAS2; Lung adenoma susceptibility protein 2

RNA

  1. XR_002624999.2 RNA Sequence

  2. XR_002625001.2 RNA Sequence

  3. XR_002625000.2 RNA Sequence

Nucleotide Protein
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