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ETV1 ETS variant transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 463270, updated on 17-Aug-2024

Summary

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Official Symbol
ETV1provided by VGNC
Official Full Name
ETS variant transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:4341
Locus tag
CK820_G0021294
See related
Ensembl:ENSPTRG00000018943
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (19708538..19806525, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (17477589..17575635, complement)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134810520 Neighboring gene large ribosomal subunit protein uL24-like Neighboring gene large ribosomal subunit protein eL6-like Neighboring gene uncharacterized LOC107975707 Neighboring gene diacylglycerol kinase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS translocation variant 1
Names
ets variant gene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280329.1 → NP_001267258.1  ETS translocation variant 1

    See identical proteins and their annotated locations for NP_001267258.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305740
    UniProtKB/TrEMBL
    A0A2J8MEF6, G2HG76
    Related
    ENSPTRP00000082085.1, ENSPTRT00000099985.1
    Conserved Domains (2) summary
    smart00413
    Location:368 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:1 → 367
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    19708538..19806525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009452499.5 → XP_009450774.1  ETS translocation variant 1 isoform X7

    See identical proteins and their annotated locations for XP_009450774.1

    UniProtKB/TrEMBL
    A0A2I3TF28, A0A2J8MEF7, A0A2J8MEH0, A0A6D2X2E5
    Related
    ENSPTRP00000087467.1
    Conserved Domains (2) summary
    smart00413
    Location:311 → 395
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 310
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  2. XM_063813778.1 → XP_063669848.1  ETS translocation variant 1 isoform X5

    UniProtKB/TrEMBL
    A0A2J8MEE8, A0A2J8MEH0, A0A6D2VU53, H2RDI8

  3. XM_016945606.4 → XP_016801095.1  ETS translocation variant 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MEF6, G2HG76
    Conserved Domains (2) summary
    smart00413
    Location:368 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:1 → 367
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  4. XM_016956794.4 → XP_016812283.1  ETS translocation variant 1 isoform X5

    UniProtKB/TrEMBL
    A0A2J8MEE8, A0A2J8MEH0, A0A6D2VU53, H2RDI8
    Conserved Domains (2) summary
    smart00413
    Location:334 → 418
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 333
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  5. XM_009452495.5 → XP_009450770.1  ETS translocation variant 1 isoform X5

    See identical proteins and their annotated locations for XP_009450770.1

    UniProtKB/TrEMBL
    A0A2J8MEE8, A0A2J8MEH0, A0A6D2VU53, H2RDI8
    Conserved Domains (2) summary
    smart00413
    Location:334 → 418
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 333
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  6. XM_024357579.3 → XP_024213347.1  ETS translocation variant 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MEF6
    Conserved Domains (2) summary
    smart00413
    Location:359 → 443
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:29 → 358
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  7. XM_024357578.3 → XP_024213346.1  ETS translocation variant 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MEF6
    Conserved Domains (2) summary
    smart00413
    Location:382 → 466
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:29 → 381
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  8. XM_009452494.5 → XP_009450769.1  ETS translocation variant 1 isoform X4

    See identical proteins and their annotated locations for XP_009450769.1

    UniProtKB/TrEMBL
    A0A2I3RHS7, A0A2J8MEH0, A0A2J8MEH1, A0A6D2YCF6
    Related
    ENSPTRP00000064210.1
    Conserved Domains (2) summary
    smart00413
    Location:348 → 432
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:29 → 347
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  9. XM_024357581.3 → XP_024213349.1  ETS translocation variant 1 isoform X6

    UniProtKB/TrEMBL
    A0A2I3SFF5, A0A2I3STB5
    Conserved Domains (2) summary
    smart00413
    Location:328 → 412
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:21 → 327
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  10. XM_009452500.5 → XP_009450775.1  ETS translocation variant 1 isoform X8

    See identical proteins and their annotated locations for XP_009450775.1

    UniProtKB/TrEMBL
    A0A2I3RDL8, A0A2I3SFF5, A0A2J8MEF8, A0A6D2XA89
    Related
    ENSPTRP00000062770.1
    Conserved Domains (2) summary
    smart00413
    Location:294 → 378
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:21 → 293
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
Nucleotide Protein
Heading Accession and Version

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