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TDP2 tyrosyl-DNA phosphodiesterase 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462475, updated on 6-Jun-2024

Summary

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Official Symbol
TDP2provided by VGNC
Official Full Name
tyrosyl-DNA phosphodiesterase 2provided by VGNC
Primary source
VGNC:VGNC:7933
Locus tag
CK820_G0045330
See related
Ensembl:ENSPTRG00000017778
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
TTRAP
Orthologs
human mouse all
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Genomic context

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See TDP2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (30622466..30639446, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (30622474..30639454, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene KIAA0319 Neighboring gene uncharacterized LOC134810173 Neighboring gene keratin, type II cytoskeletal 8-like Neighboring gene acyl-CoA thioesterase 13 Neighboring gene chromosome 6 C6orf62 homolog Neighboring gene AP-3 complex subunit sigma-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-tyrosyl-DNA phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-tyrosyl-DNA phosphodiesterase; tyrosyl-DNA phosphodiesterase 2
Names
TRAF and TNF receptor associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    30622466..30639446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_518271.7 → XP_518271.4  tyrosyl-DNA phosphodiesterase 2

    UniProtKB/TrEMBL
    A0A2J8JQ77, A0A6D2YCD4, H2QSD8, K7DBQ3
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials