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JADE2 jade family PHD finger 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462067, updated on 17-Aug-2024

Summary

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Official Symbol
JADE2provided by VGNC
Official Full Name
jade family PHD finger 2provided by VGNC
Primary source
VGNC:VGNC:4055
Locus tag
CK820_G0026713
See related
Ensembl:ENSPTRG00000017242
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
PHF15
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (132272999..132328452)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (132295018..132352224)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS10-like Neighboring gene U6 spliceosomal RNA Neighboring gene U7 small nuclear RNA Neighboring gene ribosomal protein L31 pseudogene Neighboring gene secretion associated Ras related GTPase 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-2; E3 ubiquitin-protein ligase Jade-2
Names
PHD finger protein 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    132272999..132328452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016953848.4 → XP_016809337.2  E3 ubiquitin-protein ligase Jade-2 isoform X1

  2. XM_063811523.1 → XP_063667593.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LRS7, A0A6D2XG17, H2QRI0, K7CJP9

  3. XM_063811524.1 → XP_063667594.1  E3 ubiquitin-protein ligase Jade-2 isoform X5

    UniProtKB/TrEMBL
    A0A2J8LRQ5, A0A803KKJ2, K7C834

  4. XM_063811521.1 → XP_063667591.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

  5. XM_009449677.5 → XP_009447952.2  E3 ubiquitin-protein ligase Jade-2 isoform X6

    UniProtKB/TrEMBL
    A0A2I3T1P2, A0A2J8LRR1, A0A6D2XQY4
    Conserved Domains (4) summary
    COG5141
    Location:137 → 506
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:625 → 829
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    pfam10513
    Location:10 → 175
    EPL1; Enhancer of polycomb-like

  6. XM_054684613.2 → XP_054540588.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

  7. XM_054684614.2 → XP_054540589.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LRS7, A0A6D2XG17, H2QRI0, K7CJP9

  8. XM_063811531.1 → XP_063667601.1  E3 ubiquitin-protein ligase Jade-2 isoform X5

    UniProtKB/TrEMBL
    A0A2J8LRQ5, A0A803KKJ2, K7C834

  9. XM_063811526.1 → XP_063667596.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

  10. XM_016953853.4 → XP_016809342.1  E3 ubiquitin-protein ligase Jade-2 isoform X6

    UniProtKB/TrEMBL
    A0A2I3T1P2, A0A2J8LRR1, A0A6D2XQY4
    Conserved Domains (4) summary
    COG5141
    Location:137 → 506
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:625 → 829
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    pfam10513
    Location:10 → 175
    EPL1; Enhancer of polycomb-like

  11. XM_063811530.1 → XP_063667600.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LRS7, A0A6D2XG17, H2QRI0, K7CJP9

  12. XM_063811532.1 → XP_063667602.1  E3 ubiquitin-protein ligase Jade-2 isoform X5

    UniProtKB/TrEMBL
    A0A2J8LRQ5, A0A803KKJ2, K7C834

  13. XM_016953851.4 → XP_016809340.1  E3 ubiquitin-protein ligase Jade-2 isoform X6

    UniProtKB/TrEMBL
    A0A2I3T1P2, A0A2J8LRR1, A0A6D2XQY4
    Conserved Domains (4) summary
    COG5141
    Location:137 → 506
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:625 → 829
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    pfam10513
    Location:10 → 175
    EPL1; Enhancer of polycomb-like

  14. XM_063811529.1 → XP_063667599.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LRS7, A0A6D2XG17, H2QRI0, K7CJP9

  15. XM_063811525.1 → XP_063667595.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

  16. XM_016953857.4 → XP_016809346.1  E3 ubiquitin-protein ligase Jade-2 isoform X11

  17. XM_016953846.4 → XP_016809335.1  E3 ubiquitin-protein ligase Jade-2 isoform X6

    UniProtKB/TrEMBL
    A0A2I3T1P2, A0A2J8LRR1, A0A6D2XQY4
    Conserved Domains (4) summary
    COG5141
    Location:137 → 506
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:625 → 829
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    pfam10513
    Location:10 → 175
    EPL1; Enhancer of polycomb-like

  18. XM_054684611.2 → XP_054540586.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LRS7, A0A6D2XG17, H2QRI0, K7CJP9

  19. XM_016953850.4 → XP_016809339.1  E3 ubiquitin-protein ligase Jade-2 isoform X5

    UniProtKB/TrEMBL
    A0A2J8LRQ5, A0A803KKJ2, K7C834
    Conserved Domains (4) summary
    COG5141
    Location:137 → 530
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:581 → 785
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    pfam10513
    Location:10 → 175
    EPL1; Enhancer of polycomb-like

  20. XM_054684610.2 → XP_054540585.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

  21. XM_016953852.4 → XP_016809341.1  E3 ubiquitin-protein ligase Jade-2 isoform X6

    UniProtKB/TrEMBL
    A0A2I3T1P2, A0A2J8LRR1, A0A6D2XQY4
    Conserved Domains (4) summary
    COG5141
    Location:137 → 506
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:625 → 829
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    pfam10513
    Location:10 → 175
    EPL1; Enhancer of polycomb-like

  22. XM_063811527.1 → XP_063667597.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

  23. XM_063811522.1 → XP_063667592.1  E3 ubiquitin-protein ligase Jade-2 isoform X3

  24. XM_063811533.1 → XP_063667603.1  E3 ubiquitin-protein ligase Jade-2 isoform X9

  25. XM_063811534.1 → XP_063667604.1  E3 ubiquitin-protein ligase Jade-2 isoform X10

  26. XM_063811528.1 → XP_063667598.1  E3 ubiquitin-protein ligase Jade-2 isoform X8

  27. XM_016953854.4 → XP_016809343.1  E3 ubiquitin-protein ligase Jade-2 isoform X7

Nucleotide Protein
Heading Accession and Version

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