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VPS8 VPS8 subunit of CORVET complex [ Pan troglodytes (chimpanzee) ]

Gene ID: 460898, updated on 6-Jun-2024

Summary

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Official Symbol
VPS8provided by VGNC
Official Full Name
VPS8 subunit of CORVET complexprovided by VGNC
Primary source
VGNC:VGNC:2628
Locus tag
CK820_G0023392
See related
Ensembl:ENSPTRG00000015698
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See VPS8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
49
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (188000388..188239305)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (187909754..188148676)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134809626 Neighboring gene MAGE family member F1 Neighboring gene chromosome 3 C3orf70 homolog Neighboring gene enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase Neighboring gene eukaryotic translation initiation factor 2 subunit 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CORVET complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 8 homolog
Names
VPS8, CORVET complex subunit
vacuolar protein sorting 8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    188000388..188239305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016942447.3 → XP_016797936.1  vacuolar protein sorting-associated protein 8 homolog isoform X2

    UniProtKB/TrEMBL
    A0A2J8M5N0, A0A2J8M5N6, A0A2J8M5N8, A0A6D2W7S1, A0A8I3B3J6, H2QNW1, K7BNA4
    Related
    ENSPTRP00000078274.1
    Conserved Domains (4) summary
    sd00039
    Location:200 → 237
    7WD40; WD40 repeat [structural motif]
    pfam12816
    Location:612 → 794
    Vps8; Golgi CORVET complex core vacuolar protein 8
    cd16687
    Location:1254 → 1308
    RING-H2_Vps8; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 8 (Vps8) and similar proteins
    cl25539
    Location:195 → 296
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_016942443.3 → XP_016797932.1  vacuolar protein sorting-associated protein 8 homolog isoform X1

    UniProtKB/TrEMBL
    A0A2J8M5N0, A0A6D2W7S1, H2QNW1

  3. XM_054681298.2 → XP_054537273.1  vacuolar protein sorting-associated protein 8 homolog isoform X3

    UniProtKB/TrEMBL
    A0A2J8M5N0, A0A6D2W7S1, H2QNW1

  4. XM_063807397.1 → XP_063663467.1  vacuolar protein sorting-associated protein 8 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2J8M5N0, A0A6D2W7S1, H2QNW1

  5. XM_063807400.1 → XP_063663470.1  vacuolar protein sorting-associated protein 8 homolog isoform X7

    UniProtKB/TrEMBL
    A0A2I3SML3, A0A2J8M5N0, A0A6D2W7S1, H2QNW1

  6. XM_063807398.1 → XP_063663468.1  vacuolar protein sorting-associated protein 8 homolog isoform X5

    UniProtKB/TrEMBL
    A0A2I3SML3, A0A2J8M5N0, A0A6D2W7S1, H2QNW1

  7. XM_063807399.1 → XP_063663469.1  vacuolar protein sorting-associated protein 8 homolog isoform X6

    UniProtKB/TrEMBL
    A0A2I3SML3, A0A2J8M5N0, A0A6D2W7S1, H2QNW1

  8. XM_063807401.1 → XP_063663471.1  vacuolar protein sorting-associated protein 8 homolog isoform X8

  9. XM_063807402.1 → XP_063663472.1  vacuolar protein sorting-associated protein 8 homolog isoform X9

  10. XM_063807396.1 → XP_063663466.1  vacuolar protein sorting-associated protein 8 homolog isoform X1

    UniProtKB/TrEMBL
    A0A2J8M5N0, A0A6D2W7S1, H2QNW1
Nucleotide Protein
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