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PABPC4 poly(A) binding protein cytoplasmic 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 456782, updated on 17-Aug-2024

Summary

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Official Symbol
PABPC4provided by VGNC
Official Full Name
poly(A) binding protein cytoplasmic 4provided by VGNC
Primary source
VGNC:VGNC:9320
Locus tag
CK820_G0025426
See related
Ensembl:ENSPTRG00000000573
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (191399248..191415323)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (39845882..39899091, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134807881 Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene hes related family bHLH transcription factor with YRPW motif like Neighboring gene uncharacterized LOC104007435 Neighboring gene small nucleolar RNA SNORA55 Neighboring gene succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial-like Neighboring gene bone morphogenetic protein 8a Neighboring gene microtubule actin crosslinking factor 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 4
Names
poly(A) binding protein, cytoplasmic 4 (inducible form)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    191399248..191415323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_513344.9 → XP_513344.3  polyadenylate-binding protein 4 isoform X1

    See identical proteins and their annotated locations for XP_513344.3

    UniProtKB/TrEMBL
    A0A2J8LYN8, A0A6D2XQT1, H2QZS4, K7C5S2
    Related
    ENSPTRP00000039458.3
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 640
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  2. XM_009454443.5 → XP_009452718.1  polyadenylate-binding protein 4 isoform X4

    See identical proteins and their annotated locations for XP_009452718.1

    UniProtKB/TrEMBL
    A0A2J8LYR1, K7ANY2
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 595
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  3. XM_003307994.7 → XP_003308042.1  polyadenylate-binding protein 4 isoform X2

    See identical proteins and their annotated locations for XP_003308042.1

    UniProtKB/TrEMBL
    A0A2J8LYN5, K7ANY2, K7BA73
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 624
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  4. XM_063782428.1 → XP_063638498.1  polyadenylate-binding protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LYT5, A0A6D2WHC8, K7BG41, K7CKZ6

RNA

  1. XR_010147084.1 RNA Sequence

  2. XR_010147085.1 RNA Sequence

  3. XR_010147086.1 RNA Sequence

  4. XR_010147087.1 RNA Sequence

Nucleotide Protein
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