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ZIK1 zinc finger protein interacting with K protein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 456331, updated on 17-Aug-2024

Summary

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Official Symbol
ZIK1provided by VGNC
Official Full Name
zinc finger protein interacting with K protein 1provided by VGNC
Primary source
VGNC:VGNC:13122
Locus tag
CK820_G0046344
See related
Ensembl:ENSPTRG00000011562
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human all
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Genomic context

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Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (60525812..60533655)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (60525340..60535757)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 549 Neighboring gene zinc finger protein 550 Neighboring gene zinc finger protein 416 Neighboring gene zinc finger protein 530 Neighboring gene zinc finger protein 134

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein interacting with ribonucleoprotein K
Names
zinc finger protein interacting with K protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    60525812..60533655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009436525.5 → XP_009434800.1  zinc finger protein interacting with ribonucleoprotein K isoform X4

    See identical proteins and their annotated locations for XP_009434800.1

    Conserved Domains (5) summary
    smart00349
    Location:8 → 49
    KRAB; krueppel associated box
    COG5048
    Location:250 → 430
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:362 → 382
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:375 → 399
    zf-H2C2_2; Zinc-finger double domain

  2. XM_009436528.5 → XP_009434803.1  zinc finger protein interacting with ribonucleoprotein K isoform X6

    See identical proteins and their annotated locations for XP_009434803.1

    UniProtKB/TrEMBL
    A0A2I3RH02, A0A2J8JLS2, A0A6D2X9E6
    Conserved Domains (2) summary
    COG5048
    Location:214 → 394
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_009436526.5 → XP_009434801.1  zinc finger protein interacting with ribonucleoprotein K isoform X5

    See identical proteins and their annotated locations for XP_009434801.1

    Conserved Domains (4) summary
    COG5048
    Location:236 → 416
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:348 → 368
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1 → 33
    KRAB; KRAB box
    pfam13465
    Location:361 → 385
    zf-H2C2_2; Zinc-finger double domain

  4. XM_009436527.5 → XP_009434802.1  zinc finger protein interacting with ribonucleoprotein K isoform X6

    See identical proteins and their annotated locations for XP_009434802.1

    UniProtKB/TrEMBL
    A0A2I3RH02, A0A2J8JLS2, A0A6D2X9E6
    Related
    ENSPTRP00000063971.1
    Conserved Domains (2) summary
    COG5048
    Location:214 → 394
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_003316746.6 → XP_003316794.1  zinc finger protein interacting with ribonucleoprotein K isoform X2

    See identical proteins and their annotated locations for XP_003316794.1

    UniProtKB/TrEMBL
    A0A2J8JLU9, A0A6D2X0S1, H2QHA3
    Related
    ENSPTRP00000019893.5
    Conserved Domains (4) summary
    COG5048
    Location:256 → 436
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:368 → 388
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:14 → 54
    KRAB; KRAB box
    pfam13465
    Location:240 → 265
    zf-H2C2_2; Zinc-finger double domain

  6. XM_003316745.6 → XP_003316793.1  zinc finger protein interacting with ribonucleoprotein K isoform X1

    See identical proteins and their annotated locations for XP_003316793.1

    UniProtKB/TrEMBL
    A0A2J8JLV3
    Conserved Domains (4) summary
    COG5048
    Location:269 → 449
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:381 → 401
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:27 → 67
    KRAB; KRAB box
    pfam13465
    Location:253 → 278
    zf-H2C2_2; Zinc-finger double domain

  7. XM_063800933.1 → XP_063657003.1  zinc finger protein interacting with ribonucleoprotein K isoform X7

  8. XM_009436524.5 → XP_009434799.1  zinc finger protein interacting with ribonucleoprotein K isoform X3

    See identical proteins and their annotated locations for XP_009434799.1

    Conserved Domains (4) summary
    COG5048
    Location:255 → 435
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:367 → 387
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:20 → 52
    KRAB; KRAB box
    pfam13465
    Location:380 → 404
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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