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LINGO1 leucine rich repeat and Ig domain containing 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 453764, updated on 3-Apr-2024

Summary

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Official Symbol
LINGO1provided by VGNC
Official Full Name
leucine rich repeat and Ig domain containing 1provided by VGNC
Primary source
VGNC:VGNC:1924
Locus tag
CK820_G0036708
See related
Ensembl:ENSPTRG00000030235
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (69558306..69765923, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (69533169..69740502, complement)

Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene non-histone chromosomal protein HMG-17-like Neighboring gene high mobility group 20A Neighboring gene uncharacterized LOC107968390 Neighboring gene chondroitin sulfate proteoglycan 4-like Neighboring gene golgin subfamily A member 6C-like Neighboring gene basic proline-rich protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables epidermal growth factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    69558306..69765923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063794240.1 → XP_063650310.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1

  2. XM_009429626.5 → XP_009427901.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    See identical proteins and their annotated locations for XP_009427901.1

    UniProtKB/TrEMBL
    A0A2J8KSL1
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cd20969
    Location:417 → 508
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:184 → 365
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  3. XM_016927259.4 → XP_016782748.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cd20969
    Location:417 → 508
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:184 → 365
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  4. XM_009429625.4 → XP_009427900.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    See identical proteins and their annotated locations for XP_009427900.1

    UniProtKB/TrEMBL
    A0A2J8KSL1
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cd20969
    Location:417 → 508
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:184 → 365
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  5. XM_063794241.1 → XP_063650311.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1

  6. XM_054667062.1 → XP_054523037.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1

  7. XM_054667061.1 → XP_054523036.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1

  8. XM_063794239.1 → XP_063650309.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1

  9. XM_054667060.2 → XP_054523035.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1

  10. XM_016927260.4 → XP_016782749.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KSL1
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cd20969
    Location:417 → 508
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:184 → 365
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  11. XM_003314799.5 → XP_003314847.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_003314847.1

    UniProtKB/TrEMBL
    A0A2J8KSL5, A0A6D2XB75, H2R891
    Related
    ENSPTRP00000051339.2
    Conserved Domains (6) summary
    TIGR00864
    Location:341 → 421
    PCC; polycystin cation channel protein
    smart00013
    Location:41 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:66 → 371
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:120 → 179
    LRR_8; Leucine rich repeat
    cl11960
    Location:439 → 514
    Ig; Immunoglobulin domain
Nucleotide Protein
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