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LYSMD4 LysM domain containing 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 453681, updated on 29-Mar-2024

Summary

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Official Symbol
LYSMD4provided by VGNC
Official Full Name
LysM domain containing 4provided by VGNC
Primary source
VGNC:VGNC:7534
Locus tag
CK820_G0031960
See related
Ensembl:ENSPTRG00000007497
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See LYSMD4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (91532626..91547302, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (91503360..91522039, complement)

Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene endoplasmin-like Neighboring gene leucine rich repeat containing 28 Neighboring gene myocyte enhancer factor 2A Neighboring gene golgin subfamily A member 2-like Neighboring gene uncharacterized LOC129137172 Neighboring gene uncharacterized LOC129137107

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 4
Names
LysM, putative peptidoglycan-binding, domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    91532626..91547302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016927533.4 → XP_016783022.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2

  2. XM_009429942.4 → XP_009428217.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A2I3TNW9
    Related
    ENSPTRP00000090948.1

  3. XM_009429935.3 → XP_009428210.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_009428210.1

    UniProtKB/TrEMBL
    A0A2I3TDE8, A0A2J8L7H8, A0A6D2XYY8
    Conserved Domains (1) summary
    smart00257
    Location:80 → 118
    LysM; Lysin motif

  4. XM_009429941.3 → XP_009428216.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A2J8L7K5, A0A6D2WM60, H2QA55
    Related
    ENSPTRP00000012809.2

  5. XM_009429934.3 → XP_009428209.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_009428209.1

    UniProtKB/TrEMBL
    A0A2I3TDE8, A0A2J8L7H8, A0A6D2XYY8
    Conserved Domains (1) summary
    smart00257
    Location:80 → 118
    LysM; Lysin motif

  6. XM_009429933.3 → XP_009428208.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_009428208.1

    UniProtKB/TrEMBL
    A0A2I3TDE8, A0A2J8L7H8, A0A6D2XYY8
    Conserved Domains (1) summary
    smart00257
    Location:80 → 118
    LysM; Lysin motif

  7. XM_009429938.5 → XP_009428213.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_009428213.1

    UniProtKB/TrEMBL
    A0A2I3TDE8, A0A2J8L7H8, A0A6D2XYY8
    Related
    ENSPTRP00000087259.1
    Conserved Domains (1) summary
    smart00257
    Location:80 → 118
    LysM; Lysin motif

  8. XM_054667212.2 → XP_054523187.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2I3TDE8, A0A2J8L7H8, A0A6D2XYY8
Nucleotide Protein
Heading Accession and Version

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