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SYNJ2BP synaptojanin 2 binding protein [ Pan troglodytes (chimpanzee) ]

Gene ID: 453003, updated on 17-Aug-2024

Summary

Official Symbol
SYNJ2BPprovided by VGNC
Official Full Name
synaptojanin 2 binding proteinprovided by VGNC
Primary source
VGNC:VGNC:12483
Locus tag
CK820_G0002786
See related
Ensembl:ENSPTRG00000034394
Gene type
protein coding
RefSeq status
INFERRED
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 15 NC_072413.2 (68355645..68406141, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 14 NC_072412.1 (61625566..61676065, complement)

Chromosome 15 - NC_072413.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104002090 Neighboring gene cytochrome c oxidase assembly factor COX16 Neighboring gene U2 spliceosomal RNA Neighboring gene ADAM metallopeptidase domain 21 Neighboring gene uncharacterized LOC107968201 Neighboring gene disintegrin and metalloproteinase domain-containing protein 20-like

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in embryo development IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in establishment or maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in receptor localization to synapse IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in neuromuscular junction IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
synaptojanin-2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243124.4NP_001230053.2  synaptojanin-2-binding protein

    Status: INFERRED

    Source sequence(s)
    JAQQLN020000015
    UniProtKB/TrEMBL
    A0A2J8PJ20, A0A6D2X4Y1, H2Q8J4, K7DKX9
    Related
    ENSPTRP00000011010.5, ENSPTRT00000011895.5
    Conserved Domains (1) summary
    cd00992
    Location:1397
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072413.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    68355645..68406141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009428050.5XP_009426325.2  synaptojanin-2-binding protein isoform X2

    Conserved Domains (1) summary
    cd00992
    Location:13113
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
  2. XM_009428049.5XP_009426324.2  synaptojanin-2-binding protein isoform X1

    Conserved Domains (1) summary
    cd00992
    Location:13114
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...