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VPS29 VPS29 retromer complex component [ Pan troglodytes (chimpanzee) ]

Gene ID: 452237, updated on 17-Aug-2024

Summary

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Official Symbol
VPS29provided by VGNC
Official Full Name
VPS29 retromer complex componentprovided by VGNC
Primary source
VGNC:VGNC:8591
Locus tag
CK820_G0015924
See related
Ensembl:ENSPTRG00000005442
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (117302827..117313337, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (115926239..115936728, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene GPN-loop GTPase 3 Neighboring gene family with sequence similarity 216 member A Neighboring gene small nucleolar RNA SNORD50 Neighboring gene uncharacterized LOC107967640 Neighboring gene RAD9 checkpoint clamp component B Neighboring gene protein phosphatase targeting COQ7 Neighboring gene tectonic family member 1 Neighboring gene hydrogen voltage gated channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 29
Names
vacuolar protein sorting 29 homolog
XP_001143558.1
XP_003313988.1
XP_009424524.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    117302827..117313337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003313940.6 → XP_003313988.1  vacuolar protein sorting-associated protein 29 isoform X3

    See identical proteins and their annotated locations for XP_003313988.1

    UniProtKB/TrEMBL
    A0A2I3TCY6, A0A2J8MYV5, K7CSX7
    Related
    ENSPTRP00000055616.2
    Conserved Domains (1) summary
    cd07394
    Location:2 → 179
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

  2. XM_001143558.7 → XP_001143558.1  vacuolar protein sorting-associated protein 29 isoform X2

    See identical proteins and their annotated locations for XP_001143558.1

    UniProtKB/TrEMBL
    A0A2I3TCY6, A0A2J8MYX6, A0A6D2XTG2, H2RBF6, K7BVR9, K7CCL1
    Related
    ENSPTRP00000067004.1
    Conserved Domains (1) summary
    cd07394
    Location:6 → 183
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

  3. XM_009426249.5 → XP_009424524.1  vacuolar protein sorting-associated protein 29 isoform X1

    See identical proteins and their annotated locations for XP_009424524.1

    UniProtKB/TrEMBL
    A0A2I3T2Y9, A0A2I3TCY6, A0A2J8MYW9, A0A6D2WKC7, H2RBF6
    Related
    ENSPTRP00000083582.1
    Conserved Domains (1) summary
    cd07394
    Location:34 → 211
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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