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PSMD13 proteasome 26S subunit, non-ATPase 13 [ Pan troglodytes (chimpanzee) ]

Gene ID: 450913, updated on 29-Mar-2024

Summary

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Official Symbol
PSMD13provided by VGNC
Official Full Name
proteasome 26S subunit, non-ATPase 13provided by VGNC
Primary source
VGNC:VGNC:8274
Locus tag
CK820_G0044190
See related
Ensembl:ENSPTRG00000003106
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PSMD13 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (4428528..4444753)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (4342574..4358899)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104008367 Neighboring gene Bet1 golgi vesicular membrane trafficking protein like Neighboring gene RIC8 guanine nucleotide exchange factor A Neighboring gene sirtuin 3 Neighboring gene NLR family pyrin domain containing 6 Neighboring gene uncharacterized LOC129136383 Neighboring gene protein-glucosylgalactosylhydroxylysine glucosidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 13
Names
proteasome (prosome, macropain) 26S subunit, non-ATPase, 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280192.1 → NP_001267121.1  26S proteasome non-ATPase regulatory subunit 13

    See identical proteins and their annotated locations for NP_001267121.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305818
    UniProtKB/TrEMBL
    A0A2J8JW41, G2HGF4
    Related
    ENSPTRP00000087505.1, ENSPTRT00000088611.1
    Conserved Domains (1) summary
    pfam01399
    Location:231 → 335
    PCI; PCI domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    4428528..4444753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016919767.3 → XP_016775256.1  26S proteasome non-ATPase regulatory subunit 13 isoform X2

    UniProtKB/TrEMBL
    A0A2I3S928, A0A2J8JW28, A0A2J8JW41, A0A6D2VTA3
    Related
    ENSPTRP00000073488.1
    Conserved Domains (1) summary
    cl02111
    Location:231 → 308
    PCI; PCI domain

  2. XM_016919765.4 → XP_016775254.1  26S proteasome non-ATPase regulatory subunit 13 isoform X1

    UniProtKB/TrEMBL
    A0A2I3S463, A0A2J8JW27, A0A6D2XFQ2, H2R5P6, K7DIB5
    Related
    ENSPTRP00000048344.3
    Conserved Domains (1) summary
    pfam01399
    Location:233 → 337
    PCI; PCI domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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