vasn vasorin [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: vasnprovided by Xenbase
Official Full Name: vasorinprovided by Xenbase
Primary source: Xenbase:XB-GENE-941552
See related: Ensembl:ENSXETG00000017309
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	9	NC_030685.2 (20342747..20356874, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	9	NC_030685.1 (14478469..14492652, complement)

Chromosome 9 - NC_030685.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables transforming growth factor beta binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in negative regulation of transforming growth factor beta receptor signaling pathway	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in extracellular matrix	IBA Inferred from Biological aspect of Ancestor more info
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: vasorin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001005036.1 → NP_001005036.1 vasorin precursor

See identical proteins and their annotated locations for NP_001005036.1

Status: PROVISIONAL

Source sequence(s)

BC076888

UniProtKB/Swiss-Prot

Q6DF55

UniProtKB/TrEMBL

A0A6I8RVD0

Related

ENSXETP00000037686.3, ENSXETT00000037686.5

Conserved Domains (6) summary

TIGR00864
Location:265 → 344

PCC; polycystin cation channel protein

smart00013
Location:21 → 52

LRRNT; Leucine rich repeat N-terminal domain

COG4886
Location:60 → 276

LRR; Leucine-rich repeat (LRR) protein [Transcription]

sd00033
Location:52 → 75

LRR_RI; leucine-rich repeat [structural motif]

pfam00008
Location:407 → 438

EGF; EGF-like domain

pfam13855
Location:99 → 158

LRR_8; Leucine rich repeat