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riok3 RIO kinase 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448471, updated on 25-Apr-2024

Summary

Official Symbol
riok3provided by Xenbase
Official Full Name
RIO kinase 3provided by Xenbase
Primary source
Xenbase:XB-GENE-971902
See related
Ensembl:ENSXETG00000027370
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sudd
Orthologs
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Genomic context

See riok3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (109056598..109067287)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (93986394..93997804)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene Cdk5 and Abl enzyme substrate 1 Neighboring gene transmembrane protein 241 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene uncharacterized LOC100494805

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC89575

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of preribosome, small subunit precursor IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
serine/threonine-protein kinase RIO3
NP_001004996.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004996.1NP_001004996.1  serine/threonine-protein kinase RIO3

    See identical proteins and their annotated locations for NP_001004996.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075585
    UniProtKB/TrEMBL
    A0A6I8PVW6, A0A6I8PXK9, Q6DIF7
    Related
    ENSXETP00000057118.4, ENSXETT00000057118.4
    Conserved Domains (1) summary
    cd05146
    Location:247442
    RIO3_euk; Catalytic domain of the atypical protein serine kinase, RIO3 kinase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    109056598..109067287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)