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gpalpp1 GPALPP motifs containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 445079, updated on 12-Sep-2024

Summary

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Official Symbol
gpalpp1provided by ZNC
Official Full Name
GPALPP motifs containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040801-212
See related
Ensembl:ENSDARG00000058287 AllianceGenome:ZFIN:ZDB-GENE-040801-212
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc50h08; zgc:91844; wu:fc50h08
Summary
Orthologous to human GPALPP1 (GPALPP motifs containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (34685448..34694365)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (33952856..33961797)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene Kruppel like factor 5a Neighboring gene progesterone immunomodulatory binding factor 1 Neighboring gene general transcription factor IIF, polypeptide 2a Neighboring gene small nucleolar RNA SNORA31 Neighboring gene tumor protein, translationally-controlled 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
GPALPP motifs-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003473.1 → NP_001003473.1  GPALPP motifs-containing protein 1

    See identical proteins and their annotated locations for NP_001003473.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078362
    UniProtKB/TrEMBL
    A0A8M1N187, Q6DBU2
    Related
    ENSDARP00000030566.6, ENSDART00000037986.8
    Conserved Domains (1) summary
    pfam12572
    Location:268 → 397
    DUF3752; Protein of unknown function (DUF3752)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    34685448..34694365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159916.5 → XP_005159973.1  GPALPP motifs-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0R4ICQ3, A0A8M2B6Q9
    Related
    ENSDARP00000130476.1, ENSDART00000166007.2
    Conserved Domains (1) summary
    pfam12572
    Location:267 → 396
    DUF3752; Protein of unknown function (DUF3752)

  2. XM_009292085.4 → XP_009290360.1  GPALPP motifs-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AT58
    Conserved Domains (1) summary
    pfam12572
    Location:190 → 319
    DUF3752; Protein of unknown function (DUF3752)
Nucleotide Protein Strain
Heading Accession and Version

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