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tra2a.S transformer 2 alpha homolog S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444408, updated on 6-Jun-2024

Summary

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Official Symbol
tra2a.S
Official Full Name
transformer 2 alpha homolog S homeolog
Primary source
Xenbase:XB-GENE-17337865
Locus tag
XELAEV_18000042mg
See related
EnsemblRapid:ENSXLAG00005003793
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See tra2a.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (32967110..32981289, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694895.1 (284182..298386, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 7 S homeolog Neighboring gene insulin like growth factor 2 mRNA binding protein 3 S homeolog Neighboring gene mitochondrial import receptor subunit TOM7 homolog Neighboring gene uncharacterized LOC121395021

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82977

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transformer 2 alpha homolog S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092510.1 → NP_001085979.1  transformer 2 alpha homolog S homeolog

    See identical proteins and their annotated locations for NP_001085979.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073641
    UniProtKB/TrEMBL
    A0A8J0PWS4, A0A974BQL7, A0A974BQT8, A0AA97PYZ2, Q6GN77
    Conserved Domains (2) summary
    COG0724
    Location:96 → 188
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:103 → 191
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    32967110..32981289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018242270.2 → XP_018097759.1  transformer 2 alpha homolog S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J0U9L8, A0A974BQL7

  2. XM_018242268.2 → XP_018097757.1  transformer 2 alpha homolog S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0U644, A0A974BQL7

  3. XM_018242269.2 → XP_018097758.1  transformer 2 alpha homolog S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0U7D1, A0A974BQL7

  4. XM_018242271.2 → XP_018097760.1  transformer 2 alpha homolog S homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J0U6U6, A0A974BQL7
    Related
    ENSXLAP00005011294.1, ENSXLAT00005011468.1

  5. XM_018242267.2 → XP_018097756.1  transformer 2 alpha homolog S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TYW9, A0A974BQL7

  6. XM_018242273.2 → XP_018097762.1  transformer 2 alpha homolog S homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J0U648

  7. XM_018242272.2 → XP_018097761.1  transformer 2 alpha homolog S homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J0U648
Nucleotide Protein Strain
Heading Accession and Version

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