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UBP1 upstream binding protein 1 (LBP-1a) [ Gallus gallus (chicken) ]

Gene ID: 428458, updated on 3-Apr-2024

Summary

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Symbol
UBP1provided by CGNC
Full Name
upstream binding protein 1 (LBP-1a)provided by CGNC
Primary source
CGNC:9081
See related
Ensembl:ENSGALG00010018188
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See UBP1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (44541516..44586676, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (44590849..44635968, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene sushi domain containing 5 Neighboring gene F-box and leucine rich repeat protein 2 Neighboring gene uncharacterized LOC121109713 Neighboring gene uncharacterized LOC107052523 Neighboring gene cytoplasmic linker associated protein 2 Neighboring gene uncharacterized LOC101751546 Neighboring gene uncharacterized LOC107052522

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
upstream-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    44541516..44586676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046938183.1 → XP_046794139.1  upstream-binding protein 1 isoform X2

    Related
    ENSGALP00010026147.1, ENSGALT00010043969.1

  2. XM_004939488.4 → XP_004939545.1  upstream-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z6F2
    Conserved Domains (2) summary
    cd09588
    Location:356 → 422
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:37 → 241
    CP2; CP2 transcription factor

  3. XM_046938184.1 → XP_046794140.1  upstream-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z5E0
    Related
    ENSGALP00010026143.1, ENSGALT00010043961.1

  4. XM_003640723.6 → XP_003640771.3  upstream-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z6F2
    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:50 → 254
    CP2; CP2 transcription factor

  5. XM_426018.8 → XP_426018.5  upstream-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z6F2, A0A8V0ZCA8
    Related
    ENSGALP00010026140.1, ENSGALT00010043953.1
    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:50 → 254
    CP2; CP2 transcription factor

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    44590849..44635968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046911995.1 → XP_046767951.1  upstream-binding protein 1 isoform X2

  2. XM_040663801.2 → XP_040519735.1  upstream-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z6F2
    Conserved Domains (2) summary
    cd09588
    Location:356 → 422
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:37 → 241
    CP2; CP2 transcription factor

  3. XM_046911996.1 → XP_046767952.1  upstream-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z5E0

  4. XM_040663802.2 → XP_040519736.1  upstream-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z6F2
    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:50 → 254
    CP2; CP2 transcription factor

  5. XM_040663799.2 → XP_040519733.1  upstream-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z6F2, A0A8V0ZCA8
    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:50 → 254
    CP2; CP2 transcription factor
Nucleotide Protein
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