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CCDC160 coiled-coil domain containing 160 [ Gallus gallus (chicken) ]

Gene ID: 428240, updated on 17-Aug-2024

Summary

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Symbol
CCDC160provided by CGNC
Full Name
coiled-coil domain containing 160provided by CGNC
Primary source
CGNC:53301
See related
Ensembl:ENSGALG00010025953
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
POU2F3
Orthologs
human mouse all
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Genomic context

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See CCDC160 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (3849616..3886070, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (3809060..3845504, complement)

Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 136 family member 1 Neighboring gene transmembrane protein 136 Neighboring gene out at first homolog Neighboring gene uncharacterized LOC112530262 Neighboring gene tripartite motif containing 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and mapping of two chicken POU family genes and the identification of a syntenic group with human and mouse. Heltemes LM, et al. Anim Genet, 1997 Oct. PMID 9363595

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain, class 2, transcription factor 3
Names
POU class 2 homeobox 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3849616..3886070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040652162.2 → XP_040508096.1  POU domain, class 2, transcription factor 3 isoform X3

    UniProtKB/TrEMBL
    F1P1W9
    Related
    ENSGALP00010039061.1, ENSGALT00010063276.1
    Conserved Domains (2) summary
    smart00352
    Location:237 → 311
    POU; Found in Pit-Oct-Unc transcription factors
    smart00389
    Location:335 → 391
    HOX; Homeodomain

  2. XM_015298186.4 → XP_015153672.1  POU domain, class 2, transcription factor 3 isoform X2

    UniProtKB/TrEMBL
    F1P1W9
    Conserved Domains (2) summary
    smart00352
    Location:255 → 329
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:356 → 410
    Homeobox; Homeobox domain

  3. XM_015298185.4 → XP_015153671.1  POU domain, class 2, transcription factor 3 isoform X1

    UniProtKB/TrEMBL
    F1P1W9
    Related
    ENSGALP00010039063.1, ENSGALT00010063280.1
    Conserved Domains (2) summary
    smart00352
    Location:255 → 329
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:356 → 410
    Homeobox; Homeobox domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3809060..3845504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040690191.2 → XP_040546125.1  POU domain, class 2, transcription factor 3 isoform X3

    UniProtKB/TrEMBL
    F1P1W9
    Conserved Domains (2) summary
    smart00352
    Location:237 → 311
    POU; Found in Pit-Oct-Unc transcription factors
    smart00389
    Location:335 → 391
    HOX; Homeodomain

  2. XM_040690190.2 → XP_040546124.1  POU domain, class 2, transcription factor 3 isoform X2

    UniProtKB/TrEMBL
    F1P1W9
    Conserved Domains (2) summary
    smart00352
    Location:255 → 329
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:356 → 410
    Homeobox; Homeobox domain

  3. XM_040690189.2 → XP_040546123.1  POU domain, class 2, transcription factor 3 isoform X1

    UniProtKB/TrEMBL
    F1P1W9
    Conserved Domains (2) summary
    smart00352
    Location:255 → 329
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:356 → 410
    Homeobox; Homeobox domain
Nucleotide Protein Strain
Heading Accession and Version

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