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PTCD2 pentatricopeptide repeat domain 2 [ Gallus gallus (chicken) ]

Gene ID: 427217, updated on 17-Aug-2024

Summary

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Symbol
PTCD2provided by CGNC
Full Name
pentatricopeptide repeat domain 2provided by CGNC
Primary source
CGNC:66519
See related
Ensembl:ENSGALG00010011572
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Z
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (25803290..25819893, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (25803290..25819893, complement)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121108512 Neighboring gene zinc finger protein 366 Neighboring gene mitochondrial ribosomal protein S27 Neighboring gene microtubule associated protein 1B Neighboring gene transmembrane protein 252

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 2; pentatricopeptide repeat-containing protein 2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    25803290..25819893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_424804.7 → XP_424804.4  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y5F4, A0A8V0YDV7
    Related
    ENSGALP00010015866.1, ENSGALT00010027686.1
    Conserved Domains (2) summary
    TIGR00756
    Location:185 → 217
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:183 → 212
    PPR; PPR repeat [structural motif]

  2. XM_040656257.2 → XP_040512191.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8V0YDV7
    Related
    ENSGALP00010015869.1, ENSGALT00010027689.1
    Conserved Domains (3) summary
    TIGR00756
    Location:189 → 221
    PPR; pentatricopeptide repeat domain (PPR motif)
    TIGR02917
    Location:180 → 285
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00004
    Location:187 → 216
    PPR; PPR repeat [structural motif]

  3. XM_040656255.2 → XP_040512189.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8V0YDV7
    Conserved Domains (2) summary
    TIGR00756
    Location:189 → 221
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:187 → 216
    PPR; PPR repeat [structural motif]

  4. XM_040656258.2 → XP_040512192.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A8V0YDV7
    Conserved Domains (2) summary
    TIGR00756
    Location:189 → 221
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:187 → 216
    PPR; PPR repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    25803290..25819893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046935670.1 → XP_046791626.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y5F4, A0A8V0YDV7

  2. XM_046935671.1 → XP_046791627.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8V0YDV7

  3. XM_046935669.1 → XP_046791625.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8V0YDV7

  4. XM_046935672.1 → XP_046791628.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A8V0YDV7
Nucleotide Protein Strain
Heading Accession and Version

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