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SELENBP1 selenium binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 425664, updated on 6-Jun-2024

Summary

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Symbol
SELENBP1provided by CGNC
Full Name
selenium binding protein 1provided by CGNC
Primary source
CGNC:52529
See related
Ensembl:ENSGALG00010027444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human all
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Genomic context

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See SELENBP1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (2721137..2733643, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (2855780..2868290, complement)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 687 Neighboring gene phosphatidylinositol 4-kinase beta Neighboring gene methanethiol oxidase-like Neighboring gene regulatory factor X5 Neighboring gene pogo transposable element with ZNF domain Neighboring gene proteasome subunit beta 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Non-coding RNAs revealed during identification of genes involved in chicken immune responses. Ahanda ML, et al. Immunogenetics, 2009 Jan. PMID 19009289
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables selenium binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methanethiol oxidase
Names
selenium-binding protein 1-A-like
NP_001264739.1
XP_015135497.2
XP_040508286.1
XP_040508287.1
XP_040508288.1
XP_046759884.1
XP_046788567.1
XP_046788568.1
XP_046788569.1
XP_046788570.1
XP_046788572.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277810.1 → NP_001264739.1  methanethiol oxidase

    See identical proteins and their annotated locations for NP_001264739.1

    Status: VALIDATED

    Source sequence(s)
    BI065449, BM489788, BU415457, BU445053, BX935001, CF250995
    UniProtKB/TrEMBL
    A0A8V1ABZ5
    Related
    ENSGALP00010040746.1, ENSGALT00010066522.1
    Conserved Domains (1) summary
    pfam05694
    Location:7 → 471
    SBP56; 56kDa selenium binding protein (SBP56)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2721137..2733643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040652353.2 → XP_040508287.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  2. XM_015280011.4 → XP_015135497.2  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  3. XM_040652352.2 → XP_040508286.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  4. XM_040652354.2 → XP_040508288.1  methanethiol oxidase isoform X2

    UniProtKB/TrEMBL
    A0A8V1ABZ5, A0A8V1AGP5
    Related
    ENSGALP00010040750.1, ENSGALT00010066526.1

  5. XM_046903928.1 → XP_046759884.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2855780..2868290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932614.1 → XP_046788570.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  2. XM_046932613.1 → XP_046788569.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  3. XM_046932612.1 → XP_046788568.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  4. XM_046932616.1 → XP_046788572.1  methanethiol oxidase isoform X2

    UniProtKB/TrEMBL
    A0A8V1ABZ5

  5. XM_046932611.1 → XP_046788567.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABZ5

RNA

  1. XR_006937081.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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