U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BTAF1 B-TFIID TATA-box binding protein associated factor 1 [ Gallus gallus (chicken) ]

Gene ID: 423817, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Symbol
BTAF1provided by CGNC
Full Name
B-TFIID TATA-box binding protein associated factor 1provided by CGNC
Primary source
CGNC:5235
See related
Ensembl:ENSGALG00010021529
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See BTAF1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
38
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (21744551..21788006, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (21635626..21679076, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 5 Neighboring gene cytoplasmic polyadenylation element binding protein 3 Neighboring gene uncharacterized LOC101750135 Neighboring gene uncharacterized LOC107053702 Neighboring gene dual specificity phosphatase 11 Neighboring gene uncharacterized LOC112532705 Neighboring gene cyclin J

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TATA-binding protein-associated factor 172
Names
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    21744551..21788006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015288828.4 → XP_015144314.1  TATA-binding protein-associated factor 172 isoform X1

    UniProtKB/TrEMBL
    A0A1D5P1T4, A0A8V0ZD25
    Related
    ENSGALP00010031192.1, ENSGALT00010052220.1
    Conserved Domains (4) summary
    COG0553
    Location:1222 → 1794
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:345 → 370
    HEAT; HEAT repeat [structural motif]
    cd17999
    Location:1259 → 1496
    DEXHc_Mot1; DEXH-box helicase domain of Mot1
    pfam12054
    Location:579 → 1044
    DUF3535; Domain of unknown function (DUF3535)

  2. XM_046942984.1 → XP_046798940.1  TATA-binding protein-associated factor 172 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZD25

RNA

  1. XR_005861017.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    21635626..21679076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040675420.2 → XP_040531354.1  TATA-binding protein-associated factor 172 isoform X1

    UniProtKB/TrEMBL
    A0A1D5P1T4, A0A8V0ZD25
    Conserved Domains (4) summary
    COG0553
    Location:1222 → 1794
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:345 → 370
    HEAT; HEAT repeat [structural motif]
    cd17999
    Location:1259 → 1496
    DEXHc_Mot1; DEXH-box helicase domain of Mot1
    pfam12054
    Location:579 → 1044
    DUF3535; Domain of unknown function (DUF3535)

  2. XM_046920423.1 → XP_046776379.1  TATA-binding protein-associated factor 172 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZD25

RNA

  1. XR_005851502.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials