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PDDC1 Parkinson disease 7 domain containing 1 [ Gallus gallus (chicken) ]

Gene ID: 423020, updated on 5-Mar-2024

Summary

Symbol
PDDC1provided by CGNC
Full Name
Parkinson disease 7 domain containing 1provided by CGNC
Primary source
CGNC:3822
See related
Ensembl:ENSGALG00010022137
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
GATD1
Orthologs
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Genomic context

See PDDC1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (650740..660444)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (645345..655041)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein membrane associated 1 Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene aryl hydrocarbon receptor interacting protein Neighboring gene cell cycle exit and neuronal differentiation 1 Neighboring gene NLR family pyrin domain containing 3 Neighboring gene transaldolase 1 Neighboring gene EPS8 like 2 Neighboring gene uncharacterized LOC107053358

Genomic regions, transcripts, and products

General protein information

Preferred Names
glutamine amidotransferase-like class 1 domain-containing protein 1
Names
Parkinson disease 7 domain-containing protein 1
glutamine amidotransferase like class 1 domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199565.2NP_001186494.2  glutamine amidotransferase-like class 1 domain-containing protein 1 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    JAENSK010000212
    UniProtKB/TrEMBL
    A0A8V0ZP05
    Conserved Domains (1) summary
    cd03141
    Location:37214
    GATase1_Hsp31_like; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein
  2. NM_001199566.2NP_001186495.2  glutamine amidotransferase-like class 1 domain-containing protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 3' terminal exon, compared to variant 1, which results in an isoform (2) that is one amino acid shorter than isoform 1.
    Source sequence(s)
    JAENSK010000212
    UniProtKB/TrEMBL
    A0A8V0ZP05
    Related
    ENSGALP00010032420.1, ENSGALT00010053853.1
    Conserved Domains (1) summary
    cd03141
    Location:37214
    GATase1_Hsp31_like; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    650740..660444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    645345..655041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)