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TTC39C tetratricopeptide repeat domain 39C [ Gallus gallus (chicken) ]

Gene ID: 421077, updated on 17-Aug-2024

Summary

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Official Symbol
TTC39Cprovided by CGNC
Official Full Name
tetratricopeptide repeat domain 39Cprovided by CGNC
Primary source
CGNC:11205
See related
Ensembl:ENSGALG00010005148
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C18orf17
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (102867250..102901574)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (102931413..102965652)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 29 Neighboring gene laminin subunit alpha 3 Neighboring gene uncharacterized LOC121110076 Neighboring gene oxysterol binding protein like 1A Neighboring gene calcium binding tyrosine phosphorylation regulated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in otolith morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 39C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    102867250..102901574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015277984.4 → XP_015133470.1  tetratricopeptide repeat protein 39C isoform X1

    UniProtKB/TrEMBL
    A0A8V0XF49
    Related
    ENSGALP00010006763.1, ENSGALT00010012121.1
    Conserved Domains (1) summary
    pfam10300
    Location:27 → 491
    DUF3808; Protein of unknown function (DUF3808)

  2. XM_040688714.2 → XP_040544648.1  tetratricopeptide repeat protein 39C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLS2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    102931413..102965652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665629.2 → XP_040521563.1  tetratricopeptide repeat protein 39C isoform X1

    UniProtKB/TrEMBL
    A0A8V0XF49
    Conserved Domains (1) summary
    pfam10300
    Location:27 → 491
    DUF3808; Protein of unknown function (DUF3808)

  2. XM_040665630.2 → XP_040521564.1  tetratricopeptide repeat protein 39C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLS2
Nucleotide Protein Strain
Heading Accession and Version

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