U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATP6V0D1 ATPase H+ transporting V0 subunit d1 [ Gallus gallus (chicken) ]

Gene ID: 415674, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Symbol
ATP6V0D1provided by CGNC
Full Name
ATPase H+ transporting V0 subunit d1provided by CGNC
Primary source
CGNC:1599
See related
Ensembl:ENSGALG00010021637
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATP6V0D1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (1393678..1418436, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (1565972..1590731, complement)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A5 Neighboring gene formin homology 2 domain containing 1 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene uncharacterized LOC121106580 Neighboring gene SNF-related serine/threonine-protein kinase-like Neighboring gene agouti related neuropeptide Neighboring gene microRNA mir-12219 Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
V-type proton ATPase subunit d 1
Names
ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
NP_001280240.1
XP_015134621.1
XP_046781389.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293311.3 → NP_001280240.1  V-type proton ATPase subunit d 1

    See identical proteins and their annotated locations for NP_001280240.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000247
    UniProtKB/TrEMBL
    A0A8V0ZJC4
    Related
    ENSGALP00010031461.1, ENSGALT00010052555.1
    Conserved Domains (1) summary
    pfam01992
    Location:16 → 339
    vATP-synt_AC39; ATP synthase (C/AC39) subunit

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1393678..1418436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015279135.4 → XP_015134621.1  V-type proton ATPase subunit d 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZJC4
    Conserved Domains (2) summary
    COG1527
    Location:14 → 372
    NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
    pfam01992
    Location:16 → 361
    vATP-synt_AC39; ATP synthase (C/AC39) subunit

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1565972..1590731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925433.1 → XP_046781389.1  V-type proton ATPase subunit d 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZJC4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials