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PRTG protogenin [ Gallus gallus (chicken) ]

Gene ID: 415407, updated on 17-Aug-2024

Summary

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Symbol
PRTGprovided by CGNC
Full Name
protogeninprovided by CGNC
Primary source
CGNC:3210
See related
Ensembl:ENSGALG00010022482
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PRTG in Genome Data Viewer
Location:
chromosome: 10
Exon count:
29
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (7839143..7939393)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (7723753..7812521)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054174 Neighboring gene NEDD4 E3 ubiquitin protein ligase Neighboring gene pygopus family PHD finger 1 Neighboring gene dynein axonemal assembly factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of protogenin, a novel immunoglobulin superfamily gene expressed during early chick embryogenesis. Toyoda R, et al. Gene Expr Patterns, 2005 Aug. PMID 15922677
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Expression of protogenin mRNA is most prominent in E1-E3 chick embryos and subsequently its expression level declines.
    Title: Identification of protogenin, a novel immunoglobulin superfamily gene expressed during early chick embryogenesis.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protogenin
Names
protogenin homolog (Gallus gallus)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030548.6 → NP_001025719.2  protogenin precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000245
    UniProtKB/Swiss-Prot
    Q589G5
    UniProtKB/TrEMBL
    A0A1D5PVP9
    Related
    ENSGALP00010033054.1, ENSGALT00010054704.1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7839143..7939393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040706297.2 → XP_040562231.1  protogenin isoform X1

    UniProtKB/Swiss-Prot
    Q589G5
    UniProtKB/TrEMBL
    A0A8V0ZR24
    Conserved Domains (6) summary
    smart00410
    Location:117 → 199
    IG_like; Immunoglobulin like
    cd00063
    Location:797 → 887
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:303 → 388
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:210 → 283
    Ig_3; Immunoglobulin domain
    cd00096
    Location:14 → 17
    Ig; Ig strand A [structural motif]
    cl11960
    Location:14 → 106
    Ig; Immunoglobulin domain

  2. XM_025153830.3 → XP_025009598.1  protogenin isoform X1

    UniProtKB/Swiss-Prot
    Q589G5
    UniProtKB/TrEMBL
    A0A8V0ZR24
    Related
    ENSGALP00010033056.1, ENSGALT00010054707.1
    Conserved Domains (6) summary
    smart00410
    Location:117 → 199
    IG_like; Immunoglobulin like
    cd00063
    Location:797 → 887
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:303 → 388
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:210 → 283
    Ig_3; Immunoglobulin domain
    cd00096
    Location:14 → 17
    Ig; Ig strand A [structural motif]
    cl11960
    Location:14 → 106
    Ig; Immunoglobulin domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7723753..7812521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924772.1 → XP_046780728.1  protogenin isoform X1

    UniProtKB/Swiss-Prot
    Q589G5
    UniProtKB/TrEMBL
    A0A8V0ZR24
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q589G5.1 GenPept UniProtKB/Swiss-Prot:Q589G5

Gene LinkOut

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Molecular Biology Databases
Research Materials