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luc7l LUC7-like (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 415206, updated on 17-Sep-2024

Summary

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Official Symbol
luc7lprovided by ZNC
Official Full Name
LUC7-like (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040625-111
See related
Ensembl:ENSDARG00000055903 AllianceGenome:ZFIN:ZDB-GENE-040625-111
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:86815; wu:fb51e07; wu:fz47d12; zgc:101760
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L (LUC7 like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39638549..39654132)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39750704..39766285)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6B1 Neighboring gene family with sequence similarity 234 member A Neighboring gene uncharacterized LOC101885409 Neighboring gene STIP1 homology and U-Box containing protein 1 Neighboring gene Ig lambda-2 chain C region-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Miranda CL, et al. Arch Biochem Biophys, 1993 Sep. PMID 8373170
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative RNA-binding protein Luc7-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002116.1 → NP_001002116.1  putative RNA-binding protein Luc7-like 1

    See identical proteins and their annotated locations for NP_001002116.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071474
    UniProtKB/TrEMBL
    Q6IQD4
    Related
    ENSDARP00000072775.4, ENSDART00000078313.6
    Conserved Domains (2) summary
    COG5200
    Location:5 → 230
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:5 → 241
    LUC7; LUC7 N_terminus

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    39638549..39654132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470133.2 → XP_021325808.1  putative RNA-binding protein Luc7-like 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P5T9
    Conserved Domains (1) summary
    pfam03194
    Location:1 → 188
    LUC7; LUC7 N_terminus

  2. XM_005162898.4 → XP_005162955.2  putative RNA-binding protein Luc7-like 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BA63
    Conserved Domains (2) summary
    COG5200
    Location:27 → 233
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:25 → 244
    LUC7; LUC7 N_terminus
Nucleotide Protein Strain
Heading Accession and Version

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