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sft2d3 SFT2 domain containing 3 [ Danio rerio (zebrafish) ]

Gene ID: 407688, updated on 12-Sep-2024

Summary

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Official Symbol
sft2d3provided by ZNC
Official Full Name
SFT2 domain containing 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-070907-1
See related
Ensembl:ENSDARG00000070284 AllianceGenome:ZFIN:ZDB-GENE-070907-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj41a01; wu:fj41a01
Summary
Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D3 (SFT2 domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (5406238..5407884)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (5494356..5496002)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-184j22.1 Neighboring gene si:ch1073-184j22.2 Neighboring gene WD repeat domain 33 Neighboring gene dual specificity phosphatase 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The earliest transcribed zygotic genes are short, newly evolved, and different across species. Heyn P, et al. Cell Rep, 2014 Jan 30. PMID 24440719
  2. Identification of zygotic genes expressed at the midblastula transition in zebrafish. O'Boyle S, et al. Biochem Biophys Res Commun, 2007 Jun 29. PMID 17490614
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vesicle transport protein SFT2C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163995.1 → NP_001157467.1  vesicle transport protein SFT2C

    Status: VALIDATED

    Source sequence(s)
    FP016178
    UniProtKB/TrEMBL
    A0A8M1NV46, X1WFG3
    Related
    ENSDARP00000128967.1, ENSDART00000154167.2
    Conserved Domains (1) summary
    pfam04178
    Location:100 → 205
    Got1; Got1/Sft2-like family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    5406238..5407884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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