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SFT2D3 SFT2 domain containing 3 [ Homo sapiens (human) ]

Gene ID: 84826, updated on 22-Sep-2022

Summary

Official Symbol
SFT2D3provided by HGNC
Official Full Name
SFT2 domain containing 3provided by HGNC
Primary source
HGNC:HGNC:28767
See related
Ensembl:ENSG00000173349 AllianceGenome:HGNC:28767
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in protein transport and vesicle-mediated transport. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See SFT2D3 in Genome Data Viewer
Location:
2q14.3
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (127701497..127705242)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (128136730..128140475)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (128459071..128462816)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene myosin VIIB Neighboring gene uncharacterized LOC101927834 Neighboring gene Sharpr-MPRA regulatory region 7437 Neighboring gene LIM zinc finger domain containing 2 Neighboring gene G protein-coupled receptor 17 Neighboring gene WD repeat domain 33 Neighboring gene uncharacterized LOC124907885 Neighboring gene RNY4 pseudogene 7

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC5391

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vesicle transport protein SFT2C
Names
SFT2 domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032740.4NP_116129.3  vesicle transport protein SFT2C

    See identical proteins and their annotated locations for NP_116129.3

    Status: VALIDATED

    Source sequence(s)
    AC006011
    Consensus CDS
    CCDS2149.1
    UniProtKB/Swiss-Prot
    Q587I9, Q8N2P9
    Related
    ENSP00000310803.3, ENST00000310981.6
    Conserved Domains (1) summary
    pfam04178
    Location:87172
    Got1; Got1/Sft2-like family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    127701497..127705242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    128136730..128140475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)