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AGRP agouti related neuropeptide [ Sus scrofa (pig) ]

Gene ID: 397275, updated on 5-Mar-2024

Summary

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Official Symbol
AGRPprovided by VGNC
Official Full Name
agouti related neuropeptideprovided by VGNC
Primary source
VGNC:VGNC:85189
See related
Ensembl:ENSSSCG00000002775
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See AGRP in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (28132614..28135594, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (25399704..25401437, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene ATPase H+ transporting V0 subunit d1 Neighboring gene proline-rich protein HaeIII subfamily 1-like Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene CCCTC-binding factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Rapid communication: sequencing of the porcine agouti-related protein (AGRP) gene. Halverson MJ, et al. J Anim Sci, 2002 May. PMID 12019634
  2. Mapping of the porcine agouti-related protein (AGRP) gene to chromosome 6. Kim KS, et al. Anim Genet, 2001 Oct. PMID 11683727

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neuropeptide hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type 1 melanocortin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adult feeding behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuropeptide signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of feeding behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agouti-related protein
Names
agouti related protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011693.1 → NP_001011693.1  agouti-related protein precursor

    See identical proteins and their annotated locations for NP_001011693.1

    Status: PROVISIONAL

    Source sequence(s)
    AF177762
    UniProtKB/Swiss-Prot
    Q9TU18
    UniProtKB/TrEMBL
    D2KC52
    Conserved Domains (1) summary
    smart00792
    Location:1 → 124
    Agouti; Agouti protein

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    28132614..28135594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021093546.1 → XP_020949205.1  agouti-related protein isoform X1

    UniProtKB/Swiss-Prot
    Q9TU18
    UniProtKB/TrEMBL
    D2KC52
    Related
    ENSSSCP00000002994.1, ENSSSCT00000003073.4
    Conserved Domains (1) summary
    smart00792
    Location:1 → 124
    Agouti; Agouti protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9TU18.2 GenPept UniProtKB/Swiss-Prot:Q9TU18

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials