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RREB1 ras responsive element binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 395920, updated on 6-Jun-2024

Summary

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Symbol
RREB1provided by CGNC
Full Name
ras responsive element binding protein 1provided by CGNC
Primary source
CGNC:9702
See related
Ensembl:ENSGALG00010010349
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RREB-1
Orthologs
human mouse all
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Genomic context

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See RREB1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (64380281..64503142, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (64328974..64451785, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417766 Neighboring gene RIO kinase 1 Neighboring gene signal sequence receptor subunit 1 Neighboring gene uncharacterized LOC107051677 Neighboring gene uncharacterized LOC121109961 Neighboring gene uncharacterized LOC101751974 Neighboring gene uncharacterized LOC121109963

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the structure and expression of the chicken gene encoding a homolog of the human RREB-1 transcription factor. Miyake JH, et al. Gene, 1997 Nov 20. PMID 9427563
  2. Genetic variation among chicken lines and mammalian species in specific genes. Zhou H, et al. Poult Sci, 2001 Mar. PMID 11261557
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-responsive element-binding protein 1
Names
Ras-responsive element binding protein 1
transcription factor RREB-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205049.3 → NP_990380.3  ras-responsive element-binding protein 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000040
    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5
    Related
    ENSGALP00010014053.1, ENSGALT00010024789.1
    Conserved Domains (3) summary
    COG5189
    Location:16 → 126
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:49 → 69
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1300 → 1320
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    64380281..64503142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015275839.4 → XP_015131325.2  ras-responsive element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y8Y2, A0A8V0Y8Y7
    Related
    ENSGALP00010014054.1, ENSGALT00010024791.1
    Conserved Domains (3) summary
    COG5189
    Location:58 → 209
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:132 → 152
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1383 → 1403
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_040675869.2 → XP_040531803.1  ras-responsive element-binding protein 1 isoform X2

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5
    Conserved Domains (3) summary
    COG5189
    Location:16 → 126
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:49 → 69
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1300 → 1320
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_040675858.2 → XP_040531792.1  ras-responsive element-binding protein 1 isoform X2

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5
    Conserved Domains (3) summary
    COG5189
    Location:16 → 126
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:49 → 69
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1300 → 1320
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_046918752.1 → XP_046774708.1  ras-responsive element-binding protein 1 isoform X2

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5

  5. XM_040675879.2 → XP_040531813.1  ras-responsive element-binding protein 1 isoform X3

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    Conserved Domains (3) summary
    smart00355
    Location:43 → 65
    ZnF_C2H2; zinc finger
    sd00017
    Location:17 → 37
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1237 → 1257
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    64328974..64451785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910381.1 → XP_046766337.1  ras-responsive element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y8Y2, A0A8V0Y8Y7

  2. XM_046910382.1 → XP_046766338.1  ras-responsive element-binding protein 1 isoform X2

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5

  3. XM_046910383.1 → XP_046766339.1  ras-responsive element-binding protein 1 isoform X2

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5

  4. XM_046910384.1 → XP_046766340.1  ras-responsive element-binding protein 1 isoform X2

    UniProtKB/Swiss-Prot
    O57415, Q9I861
    UniProtKB/TrEMBL
    A0A8V0Y6P5

  5. XM_046910385.1 → XP_046766341.1  ras-responsive element-binding protein 1 isoform X3

    UniProtKB/Swiss-Prot
    O57415, Q9I861
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O57415.2 GenPept UniProtKB/Swiss-Prot:O57415

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