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snx3 sorting nexin 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394626, updated on 25-Apr-2024

Summary

Official Symbol
snx3provided by Xenbase
Official Full Name
sorting nexin 3provided by Xenbase
Primary source
Xenbase:XB-GENE-973408
See related
Ensembl:ENSXETG00000024393
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sdp3; Grd19; snx12; snx3a
Orthologs
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Genomic context

See snx3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (78476709..78498531)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (75515197..75537056)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101734212 Neighboring gene AFG1 like ATPase Neighboring gene nuclear receptor subfamily 2 group E member 1 Neighboring gene osteopetrosis associated transmembrane protein 1

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC75986

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within erythrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within hemoglobin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sorting nexin-3
Names
sorting nexin 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203699.1NP_989030.1  sorting nexin-3

    See identical proteins and their annotated locations for NP_989030.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061400
    UniProtKB/TrEMBL
    F7AZV5, Q6P831
    Related
    ENSXETP00000027083.3, ENSXETT00000027083.5
    Conserved Domains (1) summary
    cd07293
    Location:28150
    PX_SNX3; The phosphoinositide binding Phox Homology domain of Sorting Nexin 3

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    78476709..78498531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)