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Antxrl1 ANTXR like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 364513, updated on 5-Mar-2024

Summary

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Official Symbol
Antxrl1provided by RGD
Official Full Name
ANTXR like 1provided by RGD
Primary source
RGD:1563190
See related
Ensembl:ENSRNOG00000052152 AllianceGenome:RGD:1563190
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Antxrl; RGD1563190
Summary
Predicted to be integral component of membrane. Orthologous to human ANTXRL (ANTXR like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 10.0) See more
Orthologs
human mouse all
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Genomic context

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See Antxrl1 in Genome Data Viewer
Location:
16p15
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (9369046..9393569)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (9362211..9387762)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (10383943..10410327)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 488 Neighboring gene ANTXR like 2 Neighboring gene ANTXR like 3 Neighboring gene annexin A8 Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ANTXR like 1; anthrax toxin receptor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    9369046..9393569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039094946.2 → XP_038950874.1  anthrax toxin receptor-like isoform X1

    UniProtKB/TrEMBL
    A0A0G2K7L7, A6KFT3
    Related
    ENSRNOP00000074258.2
    Conserved Domains (2) summary
    cd01474
    Location:61 → 245
    vWA_ATR; ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ...
    pfam05587
    Location:240 → 339
    Anth_Ig; Anthrax receptor extracellular domain

  2. XM_039094947.2 → XP_038950875.1  anthrax toxin receptor-like isoform X2

    Conserved Domains (2) summary
    pfam05587
    Location:57 → 156
    Anth_Ig; Anthrax receptor extracellular domain
    cl00057
    Location:1 → 62
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein Strain
Heading Accession and Version

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