slc35c2 solute carrier family 35 member C2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc35c2provided by ZNC
Official Full Name: solute carrier family 35 member C2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2202
See related: Ensembl:ENSDARG00000037517 AllianceGenome:ZFIN:ZDB-GENE-030131-2202
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:55285; zgc:77328; wu:fb99e07; wu:fc49g11; wu:fi09e02
Summary: Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in neuromast. Orthologous to human SLC35C2 (solute carrier family 35 member C2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (20431436..20443566)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (20505088..20517225)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc49g11 (e-PCR)
- UniSTS:189259

fb99e07.x1 (e-PCR)
- UniSTS:203636

fi30d09.x1 (e-PCR)
- UniSTS:197240

fi09e02.x1 (e-PCR)
- UniSTS:204444

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
is_active_in collagen-containing extracellular matrix	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: solute carrier family 35 member C2

Names: ovarian cancer overexpressed 1; solute carrier family 35 (GDP-fucose transporter), member C2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.