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Asb13 ankyrin repeat and SOCS box-containing 13 [ Mus musculus (house mouse) ]

Gene ID: 142688, updated on 8-May-2016
Official Symbol
Asb13provided by MGI
Official Full Name
ankyrin repeat and SOCS box-containing 13provided by MGI
Primary source
MGI:MGI:2145525
See related
Ensembl:ENSMUSG00000033781 Vega:OTTMUSG00000029821
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Asb-13; C85285; 2210015B19Rik; 6430573K02Rik
Orthologs
Location:
13; 13 A1
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (3634012..3651779)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (3633322..3651025)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene guanosine diphosphate (GDP) dissociation inhibitor 2 Neighboring gene family with sequence similarity 208, member B Neighboring gene transcription initiation factor IIA subunit 2-like Neighboring gene predicted gene, 35190 Neighboring gene calmodulin-like 3

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
ankyrin repeat and SOCS box protein 13
Names
ankyrin repeat and SOCS box-containing protein 13
ankyrin repeat domain-containing SOCS box protein 13

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267724.1NP_001254653.1  ankyrin repeat and SOCS box protein 13 isoform 3

    See identical proteins and their annotated locations for NP_001254653.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 3, which is shorter than isoform 1.
    Source sequence(s)
    AC129597, BG080214
    Conserved Domains (2) summary
    cd00204
    Location:1579
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13857
    Location:2276
    Ank_5; Ankyrin repeats (many copies)
  2. NM_178283.4NP_840068.1  ankyrin repeat and SOCS box protein 13 isoform 1

    See identical proteins and their annotated locations for NP_840068.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC129597, AK078289
    Consensus CDS
    CCDS36582.1
    UniProtKB/Swiss-Prot
    Q8VBX0
    Related
    ENSMUSP00000046476, OTTMUSP00000038392, ENSMUST00000042288, OTTMUST00000074019
    Conserved Domains (4) summary
    cd00204
    Location:46170
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd03729
    Location:237278
    SOCS_ASB13; SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. ...
    pfam12796
    Location:89178
    Ank_2; Ankyrin repeats (3 copies)
    pfam13857
    Location:169221
    Ank_5; Ankyrin repeats (many copies)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

    Range
    3634012..3651779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_382012.2 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000035.1 Alternate Mm_Celera

    Range
    3623415..3641171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)