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shmt2 serine hydroxymethyltransferase 2 (mitochondrial) [ Electrophorus electricus (electric eel) ]

Gene ID: 113578000, updated on 18-Jun-2024

Summary

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Gene symbol
shmt2
Gene description
serine hydroxymethyltransferase 2 (mitochondrial)
See related
Ensembl:ENSEEEG00000021230
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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See shmt2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 3 NC_049537.1 (12131399..12154526, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826101.1 (359850..381936, complement)

Chromosome 3 - NC_049537.1Genomic Context describing neighboring genes Neighboring gene hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) Neighboring gene eph receptor A2 a Neighboring gene RNA binding motif protein 19 Neighboring gene neurexophilin-2 Neighboring gene uncharacterized LOC113577979

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cobalt ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine hydroxymethyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA 5'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-serine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in folic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycine biosynthetic process from serine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homotetramerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in purine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of oxidative phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tetrahydrofolate interconversion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BRISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine hydroxymethyltransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049537.1 Reference fEleEle1.pri

    Range
    12131399..12154526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027010947.2 → XP_026866748.2  serine hydroxymethyltransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A4W4H6E0
    Conserved Domains (1) summary
    PLN03226
    Location:36 → 457
    PLN03226; serine hydroxymethyltransferase; Provisional

  2. XM_027010946.2 → XP_026866747.2  serine hydroxymethyltransferase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A4W4H6E0
    Related
    ENSEEEP00000045638.2, ENSEEET00000046145.2
    Conserved Domains (1) summary
    PLN03226
    Location:36 → 498
    PLN03226; serine hydroxymethyltransferase; Provisional
Nucleotide Protein
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