U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113533499, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
uba52
Gene description
ubiquitin A-52 residue ribosomal protein fusion product 1
Locus tag
PHYPO_G00122130
See related
EnsemblRapid:ENSPHYG00025020625
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 21 NC_069730.1 (16256412..16258330)

Chromosome 21 - NC_069730.1Genomic Context describing neighboring genes Neighboring gene RAB11B, member RAS oncogene family, b Neighboring gene ceramide synthase 4b Neighboring gene homer protein homolog 3 Neighboring gene UPF1 RNA helicase and ATPase Neighboring gene pyroglutamyl-peptidase I

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_069730.1 Chromosome 21 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin-60S ribosomal protein L40

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069730.1 Reference fPanHyp1.pri

    Range
    16256412..16258330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026925672.3 → XP_026781473.1  ubiquitin-60S ribosomal protein L40

    UniProtKB/TrEMBL
    A0A5N5KZ80
    Related
    ENSPHYP00025049393.1, ENSPHYT00025053041.1
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.