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chad chondroadherin [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113527447, updated on 6-Jun-2024

Summary

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Gene symbol
chad
Gene description
chondroadherin
Locus tag
PHYPO_G00036670
See related
EnsemblRapid:ENSPHYG00025021614
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See chad in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 12 NC_069721.1 (14509952..14516834, complement)

Chromosome 12 - NC_069721.1Genomic Context describing neighboring genes Neighboring gene transporter associated with antigen processing, subunit type t, teleost specific Neighboring gene FA core complex associated protein 100 Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene uncharacterized LOC128319561 Neighboring gene armadillo repeat containing 7 Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2Cb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069721.1 Chromosome 12 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069721.1 Reference fPanHyp1.pri

    Range
    14509952..14516834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026915272.3 → XP_026771073.2  chondroadherin

    UniProtKB/TrEMBL
    A0A5N5MKX6
    Related
    ENSPHYP00025051283.1, ENSPHYT00025055309.1
Nucleotide Protein
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Gene LinkOut

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