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CHAD chondroadherin [ Athene cunicularia (burrowing owl) ]

Gene ID: 113486693, updated on 3-Aug-2024

Summary

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Gene symbol
CHAD
Gene description
chondroadherin
See related
Ensembl:ENSACUG00000001867
Gene type
protein coding
RefSeq status
MODEL
Organism
Athene cunicularia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Strigidae; Athene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
100 current athCun1 (GCF_003259725.1) 18 Unlocalized Scaffold NW_020799123.1 (6772019..6780058, complement)

NW_020799123.1Genomic Context describing neighboring genes Neighboring gene essential meiotic structure-specific endonuclease 1 Neighboring gene leucine rich repeat containing 59 Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene uncharacterized LOC113486696 Neighboring gene MYCBP associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020799123 Chromosome 18 Unlocalized Scaffold Reference athCun1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Athene cunicularia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference athCun1

Genomic

  1. NW_020799123.1 Reference athCun1

    Range
    6772019..6780058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026860831.1 → XP_026716632.1  chondroadherin

    UniProtKB/TrEMBL
    A0A663LSQ0
    Related
    ENSACUP00000002665.1, ENSACUT00000002835.1

  2. XM_026860832.1 → XP_026716633.1  chondroadherin

    UniProtKB/TrEMBL
    A0A663LSQ0
    Conserved Domains (6) summary
    smart00013
    Location:23 → 57
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:302 → 349
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:35 → 54
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:55 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:78 → 137
    LRR_8; Leucine rich repeat
    cl26018
    Location:41 → 290
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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