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Rbms3 RNA binding motif single stranded interacting protein 3 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113194907, updated on 15-Mar-2024

Summary

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Gene symbol
Rbms3
Gene description
RNA binding motif single stranded interacting protein 3
See related
Ensembl:ENSUPAG00010002090
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539899.1 (5638268..6299388)

NW_020539899.1Genomic Context describing neighboring genes Neighboring gene zinc finger CW-type and PWWP domain containing 2 Neighboring gene 5-azacytidine induced 2 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transforming growth factor beta receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539899 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding motif, single-stranded-interacting protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539899.1 Reference ASM342692v1

    Range
    5638268..6299388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026406224.1 → XP_026262009.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8D2GRB8, A0A8D2GWV6
    Related
    ENSUPAP00010002966.1, ENSUPAT00010003416.1
    Conserved Domains (3) summary
    TIGR01628
    Location:61 → 394
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:139 → 226
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:57 → 136
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  2. XM_026406216.1 → XP_026262001.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8D2GRB8
    Conserved Domains (3) summary
    cd12475
    Location:139 → 226
    RRM2_RBMS3; RNA recognition motif 2 found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:54 → 139
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25887
    Location:61 → 407
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  3. XM_026406234.1 → XP_026262019.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A8D2GRB8
    Conserved Domains (3) summary
    TIGR01628
    Location:60 → 392
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:138 → 225
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:56 → 135
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  4. XM_026406203.1 → XP_026261988.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8D2GQY1, A0A8D2GRB8
    Related
    ENSUPAP00010002960.1, ENSUPAT00010003410.1
    Conserved Domains (2) summary
    cd12475
    Location:139 → 226
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:57 → 136
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  5. XM_026406242.1 → XP_026262027.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8D2GRB8
    Conserved Domains (3) summary
    TIGR01628
    Location:61 → 393
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:139 → 226
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:57 → 136
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  6. XM_026406211.1 → XP_026261996.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8D2GRB8
    Conserved Domains (2) summary
    cd12475
    Location:138 → 225
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:56 → 135
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
Nucleotide Protein
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